Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi120g00057 ATGGTTGTGAACGAGAGGCCTTTAAAGAGGATGAAAAGGAGAGTCACCGCTGATCTCTACGACTTTCTCACTTTTCCGGCTGACATTGACGACAGAGTTTCCGCCGACGTACCCTTCCGGAGCAGTGTTCACCGCTTCCTCTCTAACCATGCGCGCCTCACCATTCCGCCCTCGCTATTTCCCTCCCTGATGACGTGGCAGATCTTGTTCCGGGTCGGATCTCTAGTAGACGGTTCGGACCTTTCGCCGTCCATGGTTGCCGTAGATATCGTCGAAGAAGACGTGACTCGATCTCGGAGCTCGGTTTACTGCGACCAGTGCCGAGTCGTTGGGTGGAGCGGTCATCCGGTGTGCCGTAAGCGGTATCATTTCATAATAAGGGCTGATTCAAGTAATGCCATTGAACCTTATCAACGACCTTGTTCAAAATGTGACAATCTTGTTCAGTTATCTGAACCAAGGTGTAAATGGTGTAATTTTGAAATTACTGTTGATGACATTGAGGATTGGGTGTATCTTCAAATTGAGGATAACACCCATCTTCTACATGGTGTTATTCACTCCAATGGTTATGGTCACCTGCTTACACTTAATGGAAGAGAAGGAGGTTCAAAGCTTCTCTCAGGATCTGATATTATGGGTTTCTGGGATAGGCTTTGTGCCACACTTTCTGTTAGGAAAGTTAGTGTGATGGATTTGTCTAAAAAGTTTGGGCTTGAATATCGATTGCTTCATGCAATTACCAAAGGGCGCACCTGGTATGGCAACTGGGGTTATGAATTTGGCACTGGCAGCTATGCTCTCACTCAAGATGTTTACCAGAAAGCAGTGAATACCCTGTCATGTATGCCCTTGTCCACTTTCTTATTCCAGGGTCGTGGGCCTCGAAATCGCCTGCAGAGTGTCATCACTCTTTACCAATCTCTGGCTGAGACCGAACTTCTAACAATTAAAGATCTCTTCTCCTTTTTGTTGACGTTGATCCCGGAATTCCGCAAGCCCCTGATCACGAGAACATCTGAACAACATGAATGCACCAGCACTTCTAATGTTTTGTGTGCTTGGACAAGTAATGATGTTGAAGATGTGCAAAAAGCTTTTATTAAGGTGTTGCTTGCATCAAGTGCCTGTAGTGAGAACAAATGGGTGAGTTGGCGTGCTCTCAAGGGTGCATTATGCAGAGGGGTTGCATCTCCTGAGCTTCTAGATTATAGTCTTAAGCACTTAGGAGGGAAATTAGTTGCCAATGGCATGGTAGTTCGTTCACAATGCAATCCCATTTCTAGTGCGGTGGAGTTCAGGCTTGAACCATTGAGTAATATGCATAATGGAATTGGTGCAATCTCAAGCTATCCATCAGAAGAGCAAGTGATATCTGATCTGAGGTTTTTATTTGATTCAATTGTTGATCCTGACAAAATGGTGAGCACTGGATCTCGGGTTATGAAGAAACAGGTGGCTGATTCAGCAAGGAAGCTCTTAGACTGTAAGCAATTTATGAAGGATTATTACAAGCCTGAAAAAGTGGAAGAAGAACTGCCTTCAGCCATTAAGCTTTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAAAGATGAACCATCCCCACCACCAGAGCTAATTATCTTGCCTTTGAATGCTACTGTTGCTAACCTCAGGAGTGAAGCCAATAGTGTTTTTCAAGAAGTATATGTGATGTATAAGAGATTTCAGGCAGAGAATCTCCTAGGGTATGGATCAATTAGTGATTCTTACACCTTAAAATTCTTGCTTGGAACAAGTGGGTCTGTCCGAATTCAAGGAAAATGCCTAGCTAAACATGGGCTAAACCGTTTCCGAATGGAAAGAGGAACAGAAACATGGAAAGTTGATTGCATTTGTGGAGCTAAGGATGATGATGGAGAAAGAATGTTAGCATGTGATACCTGTGGTGTTTGGCTACATACCAGATGTGCTGGGATTAAGAACTCTGATGCTATTCCTTCAAAGTTTGTGTGTATGAGATGCGTAAACTCCTATCGTAGGGAAGCCAAAAAACTGCAAGACTCTAATGGGGAAGCTTATAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGCCACTGATAATCCAGCAATTGCTGGTAACATGACTGTAAATTTTGGTGTACGTTAA 2151 0.4398 MVVNERPLKRMKRRVTADLYDFLTFPADIDDRVSADVPFRSSVHRFLSNHARLTIPPSLFPSLMTWQILFRVGSLVDGSDLSPSMVAVDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRADSSNAIEPYQRPCSKCDNLVQLSEPRCKWCNFEITVDDIEDWVYLQIEDNTHLLHGVIHSNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCATLSVRKVSVMDLSKKFGLEYRLLHAITKGRTWYGNWGYEFGTGSYALTQDVYQKAVNTLSCMPLSTFLFQGRGPRNRLQSVITLYQSLAETELLTIKDLFSFLLTLIPEFRKPLITRTSEQHECTSTSNVLCAWTSNDVEDVQKAFIKVLLASSACSENKWVSWRALKGALCRGVASPELLDYSLKHLGGKLVANGMVVRSQCNPISSAVEFRLEPLSNMHNGIGAISSYPSEEQVISDLRFLFDSIVDPDKMVSTGSRVMKKQVADSARKLLDCKQFMKDYYKPEKVEEELPSAIKLWCSVELSDQPKDEPSPPPELIILPLNATVANLRSEANSVFQEVYVMYKRFQAENLLGYGSISDSYTLKFLLGTSGSVRIQGKCLAKHGLNRFRMERGTETWKVDCICGAKDDDGERMLACDTCGVWLHTRCAGIKNSDAIPSKFVCMRCVNSYRREAKKLQDSNGEAYKSNTTCRGEVVATDNPAIAGNMTVNFGVR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi120g00057 716 SUPERFAMILY FYVE/PHD zinc finger 614 672 IPR011011 -
Sebi120g00057 716 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Sebi120g00057 716 ProSiteProfiles Zinc finger PHD-type profile. 621 671 IPR019787 -
Sebi120g00057 716 CDD PHD_MMD1_like 623 668 - -
Sebi120g00057 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 674 IPR013083 -
Sebi120g00057 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 682 - -
Sebi120g00057 716 SMART PHD_3 623 669 IPR001965 -
Sebi120g00057 716 Pfam PHD-finger 624 670 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi120g00057 Sebi-Chr120 1468566 1471517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi120g00057 82 668 PHD Transcription Factor Family AT5G22260 28.990 4.67e-90 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi120g00057 PHD 3.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi120g00057 K26271 - gmx:100780558 1081.63