Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi120g00053 ATGGCTTCCTCGTCGAGCAGCGGATTAACATTCAAGCTGCACCCTCTGGTGATCGTGAACATTTCGGACCATTACACGAGGGTGAAGTCTCAGATGAACCCAACCCTGGCGCCCCACAACAACGCCCCCAATGGCGGTGACGGCGTCGTTTCTTCCCTTCCCCCGCGGGTCTATGGTTGTGTCATAGGGGTGCAGAAGGGTCGCACCGTCGAGATCTTCAACAGTTTCGAGCTCCTCTATGATCCTTCTACCCATTCCCTCGATCGCCCCTTCCTCGAGAAGAAACAAGAGCTCTATAAGAAGGTTTTCCCACACTTCTACATACTGGGATGGTATTCAACTGGGAGTGATGCACAGGAATCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCAATTAATCATTCTCAGAAGGATCTCCCTGTCAGTATTTTTGAAAGTGAACTGCATGTCATAGATGGGAATCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAGACCGTTGAAGCAGAACGGATCTCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCAGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGTAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCCTGCGAGAATTCACTATTAAGACAAGTTTCAAGTCTCTTGAGAAGATTGCCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTAATGGATAGGAAAACTAGAGAGGTCAATCTTGAGATTGGAAAGGAAATTTGGGAGAGTCCAGGTCTCTTGAATTCCTGGGAGTTGTTCGTGGTCAGCAAGAATGGAGAAGAGAATTCTTGTAGAACACAAGGAAGAATGCAGGGCGATGCCAACATTTGGTGGAGAAGCTTATTGGTAGCTAATAACGTGGAGCAACACTTTAAGGCCATGGGAATACTTGAGGAGAAGATACAGAGGACTATCCAGCCAGGATTTGATCCAGATATCCCAATCTGGGTTCAAGATGAGGACATGGAATATTGGGAGCTAGAAAATGGAAGGGATAATGAAGTCTTGAAGGATGAAGGGGAAACTGATCTGCATGATAGTGGAACAAGGATGGAACAAACCAGTGACTATCATCGAACGGTGGGTTTCATGTGGGACGGTCAACCCACTACCACCAACAGTGATGAAGCAGGGGATATCAGTGCTGCTGGCCACGTTTTCCTTGTTGGAACTGCTGGGCGGAAAGGTTCCTCTGCTAAGGAGCAACTTAAATCTGAGTTTGGCCCTGCTGCACATCCCTTTAATATTCTGTCTCCTTGTTTGAGAGCAGTGAAGATAGGCCAGGAAGTTGGAGATAAATCTCAAGCACCTGAAACTACTGGATACTCTTGCTTATCTGCAAGCCATACAAAAGTCACAGCTATTGTTGAAGTTGAGGGCTTGGTGCTGCTATGGCAGAGAGAGAAGGGTGACTTAGCCAATGCTAGAACTATTGAGCTAGCTATGACTTGGGACGCTGGTGGGACTGTGTTTTCAGCAGCTACTAGTTATTCTCACCTTGCGGACAAGCAATTGGTTGCATGGCTTAGACCAGAAAATGAAGGCTTAGTTGGTAAAGCCGGACTTGGTCAGAACTACCCTGGTGACAAGCGCATCATCCGGAAAGTCAATGCGCTATACAACAGCATTTCTGTTGTTACCAGAGGCTGTAATGCTATGATAGCGGTGCTATCGCGTGCAATTAATAACTATGATTATGAGCAACCCTACTCCCAATAG 1857 0.4534 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNNAPNGGDGVVSSLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGNPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMDRKTREVNLEIGKEIWESPGLLNSWELFVVSKNGEENSCRTQGRMQGDANIWWRSLLVANNVEQHFKAMGILEEKIQRTIQPGFDPDIPIWVQDEDMEYWELENGRDNEVLKDEGETDLHDSGTRMEQTSDYHRTVGFMWDGQPTTTNSDEAGDISAAGHVFLVGTAGRKGSSAKEQLKSEFGPAAHPFNILSPCLRAVKIGQEVGDKSQAPETTGYSCLSASHTKVTAIVEVEGLVLLWQREKGDLANARTIELAMTWDAGGTVFSAATSYSHLADKQLVAWLRPENEGLVGKAGLGQNYPGDKRIIRKVNALYNSISVVTRGCNAMIAVLSRAINNYDYEQPYSQ 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi120g00053 618 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 272 - -
Sebi120g00053 618 Coils Coil 616 618 - -
Sebi120g00053 618 ProSiteProfiles MPN domain profile. 11 163 IPR037518 -
Sebi120g00053 618 SMART pad1_6 10 162 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi120g00053 618 FunFam COP9 signalosome subunit 6 1 197 - -
Sebi120g00053 618 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 135 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi120g00053 618 CDD MPN_CSN6 9 271 IPR033859 GO:0000338|GO:0008180
Sebi120g00053 618 Gene3D Cytidine Deaminase, domain 2 1 197 - -
Sebi120g00053 618 Pfam Maintenance of mitochondrial structure and function 183 270 IPR024969 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi120g00053 2 267 Eukaryotic Initiation Factors Gene Family AT2G39990 22.140 4.64e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi120g00053 K12179 - gmx:100797079 512.301