Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi120g00047 ATGCCTCCTACTGAGTTTATGGATCTGTCTAATTTCAGGCTCAGCCATCCCCAACAACAGGGAAGTTTCCATTTGTCTCAAATGGCAACATCCGGTGCTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAACAGCTTTGATGATATCTATGCATCATCCTTGCTTTCAAGCCTACAACAGATCCAGCCCTCTTCTTTTTATCATGGTGCTGGAACAAAATAAATCCGACTGCACTCATCAACAATCCCTACCAGCAGTTCAGTCACAAAATTCCTTTCAATCTCAGAGTGTCATGCAGTCAAAGCTCAAACTGAGAATAAGAGTGGCCTCCATCTTCAAGCAGACTTCATCCAATCACAACCTCAAAAAGATAATGGAATTAAAATGTTCTCAGCTGATCAAAGGGCTTTTGATGCTGTTGGCGGGTAACATTGAACATTCTACACCACCTGAAGAGCAAGCAGATGAAGAGGGAGATCAAAGAGGCAACGGAGACTCAATGGCTGCTGGTGCTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGGAGCCACAACCATCCGAAACCTCCTCCAAATCGCCGGTCAGGCATAGGGTCAGTTAACCTTCATACTGACATACAAGTGGACAATCCTGAACATGTTGAACCACAGAATGGTGGTGACAATGACCTGGGATGGGCTAATGTACAAAAGGGAAATATAGCTGGTACTGCTAACTGGAAGCATGACAACCTTGAAGTGACATCATCAGCATCTGTCGGCCCTGAGTACTGCAACCAGTCCACCAATTTGCAGACACAAAATAGTACTCACTTTGATTCAGGAGATGCAGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGATGAAGATGATCAAGGAACTCATGGTAGTGTATCCTTAGGTTATGATGGTGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCAACAGAGTTGAGTGGAGCTACGAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGTGAAGTAGATATCCTGGATGATGGTTATCGGTGGCGGAAATATGGACAAAAAGTTGTCAAAGGAATCCCAACCCAAGGTGTTCATTCTCCTCTTATCTGTTCTTTTGTTCTGCCACTCCCCCATTCTTTCTCACACATGAGTTACTACAAGTGCACCAATGCAGGGTGCACAGTAAGGAAGCATGTTGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATATGAGGGAAAGCACAACCATGATGTTCCCGCTGCTCGTGCTAGCAGTCACGTGAATGCAAACGCTTCAAACACTGTTCCTGGGCAAGCTTCTGGTGTTCTTCAAACCCATGTTCATAGACCTGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTTGAGAGGCCATCCCTTGGCTCATTCAGCCTTCCTGGGAGGCAGCAGTTAGGTCCTTCCCATGGCTTCTCCTTTGGTATGAATCAACCAATGCTCTCAAACCTGGCAATGTCTGGATTGGGCCCCGCGCAAGCGAAGCTTCCTGTCATGCCTGTTCATCCATTCTTGGCACAACAACGCCCAGCAAATGAAATGGGATTCATGTTGCCAAAGGGAGAACCAAATGTGGGGCCTATTCCTGAACGTGGCCTTAACCTGCCTAGTGGCTCATCAGTATATCAAAGATATTATGAGTCGCATGCCTCTTGGACCTCATATGTAAAATTTGATTCCCCCCTTATTCTTTAA 1797 0.4485 MPPTEFMDLSNFRLSHPQQQGSFHLSQMATSGAQNYHLMLQKNVKITALMISMHHPCFQAYNRSSPLLFIMVLEQNKSDCTHQQSLPAVQSQNSFQSQSVMQSKLKLRIRVASIFKQTSSNHNLKKIMELKCSQLIKGLLMLLAGNIEHSTPPEEQADEEGDQRGNGDSMAAGAGGAPSEDGYNWRKYGQKQVKGRSHNHPKPPPNRRSGIGSVNLHTDIQVDNPEHVEPQNGGDNDLGWANVQKGNIAGTANWKHDNLEVTSSASVGPEYCNQSTNLQTQNSTHFDSGDAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGIPTQGVHSPLICSFVLPLPHSFSHMSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNTVPGQASGVLQTHVHRPEPSQVHNGIGRLERPSLGSFSLPGRQQLGPSHGFSFGMNQPMLSNLAMSGLGPAQAKLPVMPVHPFLAQQRPANEMGFMLPKGEPNVGPIPERGLNLPSGSSVYQRYYESHASWTSYVKFDSPLIL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi120g00047 598 SUPERFAMILY WRKY DNA-binding domain 353 441 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 MobiDBLite consensus disorder prediction 272 336 - -
Sebi120g00047 598 SMART WRKY_cls 179 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 SMART WRKY_cls 361 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 ProSiteProfiles WRKY domain profile. 356 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 Pfam WRKY DNA -binding domain 362 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 Pfam WRKY DNA -binding domain 180 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 SUPERFAMILY WRKY DNA-binding domain 178 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 MobiDBLite consensus disorder prediction 150 213 - -
Sebi120g00047 598 ProSiteProfiles WRKY domain profile. 174 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 455 IPR044810 GO:0003700
Sebi120g00047 598 MobiDBLite consensus disorder prediction 320 334 - -
Sebi120g00047 598 MobiDBLite consensus disorder prediction 272 296 - -
Sebi120g00047 598 Gene3D WRKY domain 346 442 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi120g00047 598 Gene3D WRKY domain 170 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi120g00047 Sebi-Chr120 1201111 1203401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi120g00047 167 578 WRKY Transcription Factor Family AT5G56270 48.291 3.42e-98 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi120g00047 WRKY 7.6e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi120g00047 K18835 - gmx:100796545 716.457