Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1205g00004 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTCGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTACTCTATAATAGAGTGTGAGCCGACGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAGATTTTGCGGAGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTTCAGTCGTTGGAGTTTTTCGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACCGCACTTGCATTCTCCCAGAAGCTATCTGGTCTCCCACCAGAGACTGTGTTCCAACCACTTCTTAAAGATAATCTTGTGGCCAAAGGGATAGTTCTGACATTTATAACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAGGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCTAATGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGTCTGGTGGCCTTGGTGGAGTATAATGACAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTAACAACACAAATAACTGAGGAGGCTGATATATCTGAAGTCATTGAGACTGTCAAGGTGCGAGTTAGAGATGCTAAATTGCCAGACATTGAGGTTGTGCGGGTCCTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGGAAAAACCAGCAACAGAATGCAAATTCAGCCTTGCGCCAGTGGATGGATTTGCCGTGTATTTGCTTATCAAGAAAACCACTTAATGAATTAGAACTGCTGAATACATTCTGCACCAGTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTTGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTGAAGGCCCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAAGAGGAATAA 1272 0.4363 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPTREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLTFITDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNESFSEHFSKEGLVALVEYNDKKIFEVKLKEMKSALTTQITEEADISEVIETVKVRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANSALRQWMDLPCICLSRKPLNELELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1205g00004 423 Coils Coil 121 141 - -
Sebi1205g00004 423 ProSiteProfiles W2 domain profile. 246 423 IPR003307 GO:0005515
Sebi1205g00004 423 CDD W2_eIF5C_like 216 416 IPR043510 -
Sebi1205g00004 423 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 423 - -
Sebi1205g00004 423 SUPERFAMILY ARM repeat 253 420 IPR016024 -
Sebi1205g00004 423 SMART 542_3 337 422 IPR003307 GO:0005515
Sebi1205g00004 423 FunFam ARM repeat superfamily protein 243 423 - -
Sebi1205g00004 423 Gene3D - 253 419 - -
Sebi1205g00004 423 Pfam eIF4-gamma/eIF5/eIF2-epsilon 350 423 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1205g00004 Sebi-Chr1205 46665 51290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1205g00004 300 419 Eukaryotic Initiation Factors Gene Family AT2G34970 31.148 8.75e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1205g00004 - - gmx:100782537 754.592