Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1203g00002 ATGGGCTGTTGCCAATCTAACCTCTCCAAATATTCAACTCCTCATCAACACAGCAGCGTTGTCGTTGATAACGTTGCCTCTTCCTCCAACGGCGCCGAAAATGCAGTAGGCGTGCCGGCGTTCTCGGAGTTCTCACTCTCAGACCTCAAAGCCGCCACCAACGGCTTCAGCTCCGATCACATAGTCTCTGAGAGCGGCGAGAAAGCCCCCAATGTAGTCTACAAAGGTCGTCTCCAGAACCATAACCGTCGCTGGATTGCAGTTAAGCGGTTTTCTAAATTGGCCTGGCCCGATCCCAAGCAGTTCGCTGATGAAGCTTGGGGTGTTGGGAAATTACGACACCGGAGGCTTGCTAATTTGATTGGTTATTGCTGTGATGGAGATGAGAGGCTCCTTGTTGCAGAATACATGCCCAATGACACTCTCGCCAAACATCTTTTCCACTGGGAAAATCAGACAATTGAGTGGGACATGCGGTTAAGAGTTGCCCTATCTATCACTGAAGCATTAGATTATTGTAGTAACAAAGGTTATCCATTGTACCATGACTTGAATGCTTACAGAGTTTTATTTGATGAGAATGGCGATCCCCGGCTTTCATGTTTTGGTTTGATTAAGAACAGCAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACACCTCCTGAGTATCTGAGAAATGGGAGGGTGACTCCAGAAAGTGTTATCTTCAGCTTCGGGACTGTGTTACTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGCACTTGACATGATAAGAGGTAAAAATATTCGACTCCTCATGGATTCACATTTGGAGGGAAACTTTTCAACGGAAGAGGCAACTGTGGTTTTTGATCTTGCTTCACAATGTTTGCAGTATGAACCTCGGGAGCGGCCCAAGGCCAAGGACCTAGTTACAACACTTTCTACACTACAAACTAAACCCGATGTTCCATCGTATGTTATGCTTGGAATTCCAAAGCATGAGGAAGCACCTCCTACCCCACAGCATCCTCTATCTCCATTGGGTGATGCTTGTTCTCGTATGGACCTTACGGCCATTCATCAGATTTTGTTGATGACAAACTACAGAGATGACGAAGGGTGTAATGAGTTATCTTTCCAAGAGTGGACGCAGCAAACGAGAGATATGTTAGAGGCAAGAAAGCGTGGTGATTTGGCATTTCGGGACAAGGATTTTAAAACTTCAATTGAGTGTTACTCTCAGTTCATTGATATTGGAACCATAGTTTCGCCAACTGTCTATGCACGGAGAAGTGTTTGCTATCTCTTTTGTGATCAACCAGATGCTGCTCTCAGAGATGCAATGCAAGCTCAATGTGTGTATCCTGATTGGTCCACAGCATTTTACATGCAGGCGGTAGCTCTTTCCAAATTAAACATGGAGAAGGATGCAGCTGACATGTTGAGTGAGGCCGCTGCTCTCGAAGAGAAAAGGCAACGAGGAGGGAAATGA 1488 0.457 MGCCQSNLSKYSTPHQHSSVVVDNVASSSNGAENAVGVPAFSEFSLSDLKAATNGFSSDHIVSESGEKAPNVVYKGRLQNHNRRWIAVKRFSKLAWPDPKQFADEAWGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWDMRLRVALSITEALDYCSNKGYPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNIRLLMDSHLEGNFSTEEATVVFDLASQCLQYEPRERPKAKDLVTTLSTLQTKPDVPSYVMLGIPKHEEAPPTPQHPLSPLGDACSRMDLTAIHQILLMTNYRDDEGCNELSFQEWTQQTRDMLEARKRGDLAFRDKDFKTSIECYSQFIDIGTIVSPTVYARRSVCYLFCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALSKLNMEKDAADMLSEAAALEEKRQRGGK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1203g00002 495 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Sebi1203g00002 495 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Sebi1203g00002 495 SUPERFAMILY TPR-like 389 488 IPR011990 GO:0005515
Sebi1203g00002 495 Coils Coil 469 489 - -
Sebi1203g00002 495 Gene3D Phosphorylase Kinase; domain 1 32 136 - -
Sebi1203g00002 495 Gene3D Transferase(Phosphotransferase) domain 1 138 328 - -
Sebi1203g00002 495 Pfam Protein tyrosine and serine/threonine kinase 72 312 IPR001245 GO:0004672|GO:0006468
Sebi1203g00002 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 492 IPR045845 GO:0004672|GO:0009742
Sebi1203g00002 495 Gene3D Tetratricopeptide repeat domain 387 493 IPR011990 GO:0005515
Sebi1203g00002 495 ProSiteProfiles Protein kinase domain profile. 59 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1203g00002 495 FunFam probable serine/threonine-protein kinase At4g35230 31 136 - -
Sebi1203g00002 495 FunFam probable serine/threonine-protein kinase At4g35230 386 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1203g00002 Sebi-Chr1203 2035 6176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1203g00002 40 339 Glycoside Hydrolase AT3G07070 33.945 1.25e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi1203g00002 PK_Tyr_Ser-Thr 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1203g00002 K14500 - vvi:100245381 871.692