Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1201g00002 ATGGGTTGTGTTATGTGGCTTCAATCTTCGTTGCACAGTACTATCAGTTCTTGGCAAACAGCTCGATCAAGAATGGGTTGTGTCGTGTTTGTGGCAAGAAGAGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGTTGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAGGCAGTAATTCGAGATTGA 267 0.412 MGCVMWLQSSLHSTISSWQTARSRMGCVVFVARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVIRD 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1201g00002 88 Pfam Helix-loop-helix DNA-binding domain 33 72 IPR011598 GO:0046983
Sebi1201g00002 88 SMART finulus 29 77 IPR011598 GO:0046983
Sebi1201g00002 88 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 71 IPR011598 GO:0046983
Sebi1201g00002 88 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 85 IPR024097 GO:0006355
Sebi1201g00002 88 Coils Coil 68 88 - -
Sebi1201g00002 88 Gene3D - 32 88 IPR036638 GO:0046983
Sebi1201g00002 88 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1201g00002 Sebi-Chr1201 5806 6484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1201g00002 32 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 100.000 3.44e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi1201g00002 HLH 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1201g00002 - - atr:18432564 105.145