Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi11g00143 ATGGATGAAATTGAGGTCCCTGCCCTTTTCCTCTGCCCCATTTCCTTGCAGCTTATGAGAGACCCTGTCACAGTGTGCACAGGAATCACTTACGACAGAGAAAACATAGCAAGATGGGGCAATAGATTTCTTGGCTTCAACCATGATGAACATAAGCCAAAAGATTCAACTTTTATGAGTGAAGTTGCTATTGAAGTCTTGTTTCACCTGAATCCTTCAGGAGGAGAGCTTAAAAATCTGATAAACAAAGAGGGTATTCAATTTATTGAGTCATTATTTCAGGTCTTGAAGTTTGGGAATAACCAGTCTCGAGGTTATGCAACTATGTTATTGAAGTCAACATTTGAGGTGGCTGATCCAATCCAATTAAACAGTGTCAGAACTGAACTGTTTGTGGAAATTACAAGAGTTTTAAGGGATCAGATTTCAGAGAAAGCTTCTAAAGCAGCTTTGAAGCTTCTCGTGGAGTTGTGTTCATGGGGTAGAAACCGAGTCAAAGCAGTTGAGGGTGGTGTGGTTTTTGTCCTTGTTGAGCTTCTTCTTCAAGTCTCTGAAAGAAGAGTATGTGAACTCATGTTGATGGTTTTGGATAAACTCTGTGGGTGTGCAGAAGGAAGGGCTGAATTGTTGAAGCATGGAGCTGGAGTGGCCATTGTAGCCAAGAAAATTCTAAGGATTTCTCATGGGGCAAGTGATAGAGGGGTTAGAATTTTGGCTTCCATTTGTAGGTATTCAGCCACCCCTAGAGTCCTTCAAGAAATGTTGATATTTGGAGCTGTGTCAAAGTTGTGTTTGGTGCTTGAAGTTGAAGGTAGTTTCAAGGCCAAGGACAGAGCCAGGGAGATACTCAAATTGCACTCTGCGGTTTGGAAGAATTCCTCTTGTATTCCTCAGCATTTGCTTTCATCCTATCCATGA 918 0.4172 MDEIEVPALFLCPISLQLMRDPVTVCTGITYDRENIARWGNRFLGFNHDEHKPKDSTFMSEVAIEVLFHLNPSGGELKNLINKEGIQFIESLFQVLKFGNNQSRGYATMLLKSTFEVADPIQLNSVRTELFVEITRVLRDQISEKASKAALKLLVELCSWGRNRVKAVEGGVVFVLVELLLQVSERRVCELMLMVLDKLCGCAEGRAELLKHGAGVAIVAKKILRISHGASDRGVRILASICRYSATPRVLQEMLIFGAVSKLCLVLEVEGSFKAKDRAREILKLHSAVWKNSSCIPQHLLSSYP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi11g00143 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 56 IPR013083 -
Sebi11g00143 305 PANTHER WDSAM1 PROTEIN 3 39 IPR045185 GO:0061630
Sebi11g00143 305 SUPERFAMILY RING/U-box 3 40 - -
Sebi11g00143 305 SMART Ubox_2 9 84 IPR003613 GO:0004842|GO:0016567
Sebi11g00143 305 Pfam U-box domain 6 42 IPR003613 GO:0004842|GO:0016567
Sebi11g00143 305 SUPERFAMILY ARM repeat 89 268 IPR016024 -
Sebi11g00143 305 ProSiteProfiles U-box domain profile. 5 39 IPR003613 GO:0004842|GO:0016567
Sebi11g00143 305 Gene3D - 57 301 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi11g00143 Sebi-Chr11 3505754 3506960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi11g00143 1 39 U-box Gene Family AT3G52450 70.000 9.38e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi11g00143 - - gmx:100778012 338.961