Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi11g00107 ATGTCGGGCACGCGAGCTCCCCCCGCCGCCGCGCCTTCCAACCCGCCGGAGCAGATCATGCAGTCAATGAAACGCCAACTGCCGTTCTCCTCCATGAAGCCGCCTTTCGTAGCTGCCGGAGATTATCATCGTTTCGCCCCCGACCAACGCCGAAATCCTGAGCAAGACGCCGAAGTCATCATCGTTAAGACTCCCCTATTGAAGCGGAAGAATGAAGCAGCCGATTTTGAAGCTGATTCAGGTGATAGGATGACTCATGGATCCACTGATGCAGCTAATAGTCCTTTTCAGACGCCTGTATCAGGAAAGATGGGGAAGGGGGGCAAATCCTCTAGATTGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTTTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTCGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATACGATATAACAAATGTTCTTGAAGGGATTGGCCTCATAGAAAAGAAGCTCAAGAACCGGATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGTCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGTTTGGATTCCATGCGTTTGCTGATTCTTTATTGAATAATTGCAATAATGAAACGTTGATAGCAATTAAAGCTCCACACGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTTCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGATGTTGCACCCAAATTTCCATCTAGTCCAGAATTTCACAAGCATCAATCAACTGTGGTCCCAGAGGATAGAGGGAAGGACACAGAGGTGCAGGAACAAGATGTTCATGGACCTAGTTCGGATTTTACTTCCTCTCAGGATTTTGTGAGTGGAATCATGAAGATTGTTCCTTCTGATGTTGCTAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGACACACTTCAAGAAGATTATTGTATGACTCGTGAGCAAACTACAACTCCAAGTCATCCTTCGAATGTAGGTAAAGTGCCTTCTGCATCTAATCCTACTGGAGGTTGA 1335 0.4487 MSGTRAPPAAAPSNPPEQIMQSMKRQLPFSSMKPPFVAAGDYHRFAPDQRRNPEQDAEVIIVKTPLLKRKNEAADFEADSGDRMTHGSTDAANSPFQTPVSGKMGKGGKSSRLTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQSEVENLTMEERRLDEQIRFGFHAFADSLLNNCNNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPEFHKHQSTVVPEDRGKDTEVQEQDVHGPSSDFTSSQDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELDTLQEDYCMTREQTTTPSHPSNVGKVPSASNPTGG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi11g00107 444 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Sebi11g00107 444 Gene3D - 137 210 IPR036388 -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 334 352 - -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 112 140 - -
Sebi11g00107 444 SUPERFAMILY E2F-DP heterodimerization region 222 307 IPR037241 -
Sebi11g00107 444 FunFam E2F transcription factor 1 137 210 - -
Sebi11g00107 444 Coils Coil 159 179 - -
Sebi11g00107 444 CDD E2F_DD 219 307 IPR032198 GO:0046983
Sebi11g00107 444 MobiDBLite consensus disorder prediction 86 100 - -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 1 21 - -
Sebi11g00107 444 Pfam E2F transcription factor CC-MB domain 256 306 IPR032198 GO:0046983
Sebi11g00107 444 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 421 444 - -
Sebi11g00107 444 PANTHER TRANSCRIPTION FACTOR E2F 88 404 IPR015633 GO:0000978|GO:0006357
Sebi11g00107 444 Coils Coil 221 241 - -
Sebi11g00107 444 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Sebi11g00107 444 Gene3D - 250 307 - -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 324 361 - -
Sebi11g00107 444 MobiDBLite consensus disorder prediction 78 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi11g00107 Sebi-Chr11 2644506 2649645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi11g00107 18 430 E2F-DP Transcription Factor Family AT5G22220 52.928 3.53e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi11g00107 E2F_TDP 1.2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi11g00107 K06620 - gmx:100819817 718.383