Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi11g00056 ATGTACCAACATCAAGGAAAGAACATCCATTCTTCTTCCAGAATGTCAATCCCTTCTGAAAGGCACATGTTGATTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTCCTCTCAACTGATGCTAAGCCTAGATTGAAGTGGACACAAGATCTTCATGGCAGGTTCATAGAAGCTGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGCCATCTGCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGTAACAACGTGATACACAAAATCAGTGCAGCAACAGGAGAAAGACTCTCTGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCTCCTCAGTCTAACAACAGAGATTTACACATAAGTGAGGCACTGCAGATGCAGATAGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCCCAAGGAAAATACCTACAGTCTGTGCTAGAGAAAGCTCATGAAACGCTTGGTAGACAGAATTTGGGAATGGTAGGACATGAAGCTGCTAAAGTTCAACTTTCAGAACTAGTGTCCAAAGTATCCACTCAGTGCCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTGCAAACACAAAACAACCAGCCAACTGATTGCTCTATGGACAGTTGTCTCACATCATGTGATGGATCACAAAAAGAGCAAGATATACAAAATGGGAGGATGATGTTAAGACCCTTCAATTGCCACACATTCATGGAACAAAAGGAAGTCATAGAGACTCCCAATCCCAACCTACAGAACTCTGACCTCAAGTGGTGTGATCCAGTGAAAAAGAACACCTTTCTTACCCCATTAAGCAAGAATCCTGAAACAAGAAGTTATGTTGTAGAAAGAAGTCCAAGCAACTTATCTATGAGCATTGGACTAGAAGGACAAACAGAGAATGGGAGCAGTATGTATCCTGAGAAAATAATCACAGGGAGACAGACAGATGGTGAATTCCAACACACAACAGAATCAATGAAACCAATGACTGGAAAGGGTTCTCAAGATTATAGGTTTCCTTCTTACTTTGCATCAACAAAACTAGACCTAAGAACTGAAGATAATGGGGCTGCAGGGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTGA 1236 0.4183 MYQHQGKNIHSSSRMSIPSERHMLIQTGNGSGDSGLVLSTDAKPRLKWTQDLHGRFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVIHKISAATGERLSENNGTHVNNLNLAPQSNNRDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQSVLEKAHETLGRQNLGMVGHEAAKVQLSELVSKVSTQCLNSAFSELKELQGLQTQNNQPTDCSMDSCLTSCDGSQKEQDIQNGRMMLRPFNCHTFMEQKEVIETPNPNLQNSDLKWCDPVKKNTFLTPLSKNPETRSYVVERSPSNLSMSIGLEGQTENGSSMYPEKIITGRQTDGEFQHTTESMKPMTGKGSQDYRFPSYFASTKLDLRTEDNGAAGSCKQLDLNGFSWS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi11g00056 411 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Sebi11g00056 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
Sebi11g00056 411 Coils Coil 145 165 - -
Sebi11g00056 411 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 270 IPR044848 GO:0003700
Sebi11g00056 411 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Sebi11g00056 411 Gene3D - 42 100 - -
Sebi11g00056 411 Pfam MYB-CC type transfactor, LHEQLE motif 143 189 IPR025756 -
Sebi11g00056 411 FunFam Myb family transcription factor 42 100 - -
Sebi11g00056 411 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi11g00056 Sebi-Chr11 1424762 1427058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi11g00056 75 411 G2-like Transcription Factor Family AT3G04030 50.581 2.22e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi11g00056 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi11g00056 - - gmx:100810396 595.119