Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi11g00017 ATGAGCGGCGACGGCCGGAGACGGGACTGGATAGACTCCAGGATATCCAAGAAGCAGAAAGCTGATCCTCAACGCCGAGGAAGAGCTCGAGGCAAATCATCTTTTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTTGATCTTTACTTTGTTACACAGGATGGGTCTACATTCAAGTCAAAATACAGATTTCACCCTTATTTTTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGACGACGCTATGAAAGTCAGATTGCCAATATTGAAATTATAGAGAAGGAAGACCTGGATCTTAAAAATCATCTGTCTGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGAAACAATTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCACAAGCCTATGAGGCCATATTAACCGGAAGAAGAGAACAAAAACCTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCCATTGACAATGATATACGGAGTGGCCAGTGGTATGACGTTGGAGTGTCCAATAACGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACTAAACTTCCCTTAAAATTTCCTGATGCCGAGTATGATTTGATTATGATGATTTCATACATGGTCGATGGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGAGGACATAGAGGATTTAGAATACACTCCAAAACCAGAGTTTGAAGGGTATTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACATATAATGGTGATTTCTTTGATTGGCCATTCATGGAACGAAGGGCAGCCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTTCAATGCGACACGAATCAAGGGGAGTGTCGTGCTAAATTTGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCGCAGGGGAGCCAAGGCCTGAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCATTGGAAGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACATATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAGCATCAATCTGATCCAGAGAAGTTTTACAACAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTGGAATGCCTAGAAAGTGGTGTTTTTAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATGAGCAATTGATCAGCAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCACCAATTATGATGAAGTAAAGAATGCTATCACGGAAAAGCTTGTAAAATTACGAGATGCACCGATTCGTGATGAATGCCCCCTCATTTATCATCTGGATGTTGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCACCATCAATTGTTACGGATGAGATTTGCACTGCATGTGACTTTAACCGTCCTGGAAAGACTTGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATTTAAAGAAGCAGATTGAGTCAGAGCTTGTTGATGGTGCTAATGAGAGGTCATCAAAATCTTTTCTTGACCTACCCAAGTCAGAGCAACAATCAAGACTGAGAGAGCGTTTAAAGAAATATTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATTTGCATGCGTGAAAATCCATTTTATGTGGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAGGGCCTTAATAAGGTTTGGAAGGGAAAACTAGCAGAGGCCAAGGCCAGTGGAAATTCTATAAAGATCCAGGAAGCACAAGATATGGTAGTGCTTTATGATTCATTGCAACTCGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGCGTAGTCACATATACTGGTGCAAAAATTATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGGAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCGCAGATCCAATTAAGAAAACTTATACAATTCATAGTGAATGCTCTATTGAGTTTGAGGTGGATGGACCATACAAGGCAATGATCATTCCTGCTTCCAAGGAGGAAGGGATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGGGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTCGACAAGTTTCTGCATGGCTCAACCTTAAAGGAATGCTATTCTTCCGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAACAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATTTTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCTGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTATAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGAAAATTAGTTGATGCCTTTAATTCAATGAACAAGAATAAAAAGCATAATGATTCTAATGGTGTCTGCCTTGTGATGGATGATGAAACTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAATTCTACATGCGGACCTAGACCAATTATACGGCAGTATGAAGCTAATAATGAACGGAATTTAATGGAGCCCAACGGTCAAGAAGATTTGGAGCAACGACATAATGATCGTGGCAGCATGGATCAGCAACTTTCACCATTGCAACAAAATGAAATATCATGTGAAAACGTTGACAGGACTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAGTTATGCTGGAAAGGAAAAAGAAGCGAAGATTGGAGAAATCTGACCATTTAAATGGCATTCTGGAACCACTGAATGGTAAGATTAAACAGGGCAGGGGTAATGTCAGTTCATACATGATAAGCCCTGAAGACTATCTAACTCAGTACCACTGGCAGATAATACAGCTAGTTCACAGTTCACAGACTAGCCAAATTTTTGCTTGGGTTATTGTTGCTGGGTTTATGTGTATGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCTAAATCACCAATTACTGAAGAGTCACCAATTACTGAAGAATTTTGGGTTAAACGTGTCAACAAGACTCTTCCTCATGGAAGACCTAGTTATAACCTGTATGAGGTGACACCTAAAGTTCAAAATATTGAAGCAGACAAAAAACTTGCAGATCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAACACTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAAAAAACGTAGTCTACAAAAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTACCTCGAACAATCAATATCCTTCTTTTACTTGTACCATAGCATCTCTGAGGGGCGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAAATTTTCTTGAAAGACAATTTCATGCCGCTTGCCAAGCTTTGTCTATTGAGCCACCTCCAAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTGATGCAAAGTGCAATTAATTATCACAGAGATAGGAGTGAACATCGTAAGCCCATGGTTGCTGTCATTGAATGTCCAAATGTTCAACTAGTAAAATTGGGCATTCCAGCTCTAGATAATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCAGCCCAGTGGTTAAATGAGAGAATTGCTCTATCAAGATATGCCCATGTACCACTAGGAAACTTAGAACCTGACTGGCTTATATTTACAGCAGATACCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTTCTTTGGATATCTGATGATGGGCTTCCAGACTTGGGTGGCATTAATGGTGAAGAGAACTGTTTTGTCGACGAGGTCCACCAACCTGTTCTCACGTATCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGAATGGCTTTGATGAGTCTACTTCATGTGCACTCCCCTTTCGAGTCCTAAAACAGTTGATCCAGCGGTGCCTTGCTGATGCAGTTACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTATATAGATGGCTTTGCAGCCCACAATCAAAACTTCATGATCCAGCTCTTCACCAACTACTTCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTTCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATTGACACAGGGAAATATGATCTGTCTGCAGCCAAAGCTTACTGTGATAGTTTGTTCAAAACTATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTATTCATGGACCAGTATAACTATGGTGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAATCTCAAGTTGACATCATATCAAGCTGGAATATTTCTGAGTACTTACCAAAAAAAAATCCAAAGAAACTGCTAGGAGTTGTTCGTGACATTGTTCTTCATATGAAGGAGATGATCAGATCAGAAAAAGACCAGAGTATATCATCCGGCCCTCCTCAACTCATGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCCCTCGACCAGAGTGTGCAGCATGATGTATTGGTCATGAGAAAGAATTTGTTAAAATATGTTCGGGTGAGGGAGTTTGCTCCAGAAGCAGAGTTTCGTGATCCTTGTCATTCCTTCATCTTATCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGTCGAGACTCGGCTTTATTGACTGAGGAGTGGCGTTGTGCCGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCCCTTCTTCAGATTGTACGACAAAGGGAGCGGCTATACCACCTGCAAGATCTGGTGTGTCTCAGGTGCCACCAGGTGAAAGCTGCACATTTAGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGACGTAAGTGAATTCCGCACAAACATGCAGATATTCTTAAACATAGCTTCTCGGCAGAAATTCCAACTTCTTCAAGAATGTACCTCCTGGATTTTAGAACTTAGATTAGATAGTTAA 6279 0.4093 MSGDGRRRDWIDSRISKKQKADPQRRGRARGKSSFEDEETHKVYSCVDLYFVTQDGSTFKSKYRFHPYFYAATKDKMEMDVEAYLRRRYESQIANIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVKQLMNVKSDLMHVVERNKAKSDAAQAYEAILTGRREQKPQDFLDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVGVSNNGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFMERRAAHHGFKMSDELGFQCDTNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYEQLISNLDRDLQYAIRVEGKMDLESVTNYDEVKNAITEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHLKKQIESELVDGANERSSKSFLDLPKSEQQSRLRERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLAEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLADPIKKTYTIHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLKECYSSVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKEDKFRQRKLVDAFNSMNKNKKHNDSNGVCLVMDDETVNDLEDFGNKGRNSTCGPRPIIRQYEANNERNLMEPNGQEDLEQRHNDRGSMDQQLSPLQQNEISCENVDRTVDYQGWLQIKKRKWKVMLERKKKRRLEKSDHLNGILEPLNGKIKQGRGNVSSYMISPEDYLTQYHWQIIQLVHSSQTSQIFAWVIVAGFMCMIPVSVPRVFYLNSKSPITEESPITEEFWVKRVNKTLPHGRPSYNLYEVTPKVQNIEADKKLADLLADPDVEGIYETKVPLEFNTIVQLGCVCKVDKTAKKRSLQKPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPNFLERQFHAACQALSIEPPPRNGINFKVDYVAHVKDAETVMQSAINYHRDRSEHRKPMVAVIECPNVQLVKLGIPALDNFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASAQWLNERIALSRYAHVPLGNLEPDWLIFTADTFFSRALHDNQQVLWISDDGLPDLGGINGEENCFVDEVHQPVLTYPGAYRKVTVELKNGFDESTSCALPFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSAAKAYCDSLFKTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNISEYLPKKNPKKLLGVVRDIVLHMKEMIRSEKDQSISSGPPQLMGDLHRGDAALEFIKHVCAVLALDQSVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCHQVKAAHLAEQCACAGSFRCKEDVSEFRTNMQIFLNIASRQKFQLLQECTSWILELRLDS 2092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi11g00017 2092 Gene3D - 217 447 IPR036397 GO:0003676
Sebi11g00017 2092 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 33 1692 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Sebi11g00017 2092 Gene3D - 920 1104 IPR042087 -
Sebi11g00017 2092 FunFam DNA polymerase epsilon catalytic subunit 35 206 - -
Sebi11g00017 2092 MobiDBLite consensus disorder prediction 1 34 - -
Sebi11g00017 2092 Pfam Domain of unknown function (DUF1744) 1510 1692 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Sebi11g00017 2092 Pfam Domain of unknown function (DUF1744) 1694 1838 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Sebi11g00017 2092 SUPERFAMILY DNA/RNA polymerases 448 1126 IPR043502 -
Sebi11g00017 2092 Gene3D Palm domain of DNA polymerase 731 916 IPR023211 -
Sebi11g00017 2092 SMART polmehr3 218 821 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi11g00017 2092 SMART DUF1744_2 1492 1838 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Sebi11g00017 2092 FunFam DNA polymerase epsilon catalytic subunit 920 1104 - -
Sebi11g00017 2092 FunFam DNA polymerase epsilon catalytic subunit 219 447 - -
Sebi11g00017 2092 FunFam DNA polymerase epsilon catalytic subunit 702 777 - -
Sebi11g00017 2092 FunFam DNA polymerase epsilon catalytic subunit 735 916 - -
Sebi11g00017 2092 Pfam DNA polymerase family B, exonuclease domain 53 379 IPR006133 -
Sebi11g00017 2092 Pfam DNA polymerase family B 730 1043 IPR006134 GO:0000166|GO:0003677
Sebi11g00017 2092 Gene3D DNA Polymerase, chain B, domain 1 36 207 - -
Sebi11g00017 2092 CDD DNA_polB_epsilon_exo 219 422 - -
Sebi11g00017 2092 CDD POLBc_epsilon 482 1101 - -
Sebi11g00017 2092 SUPERFAMILY Ribonuclease H-like 39 446 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi11g00017 31 2086 Core DNA Replication Machinery Family AT2G27120 67.713 0.0 2898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi11g00017 K02324 - gmx:100812003 3528.41