Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi11g00011 ATGGCGCCAGAGGACACTGTAACTTCAAACCCTAGCCATGGAGAACGACCAAAGGTGGTGGTTATAACGGGCCCCACCGGTTCTGGTAAGTCGAAGCTCGCCGTTGATTTGGCCTCTCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAAGTCTACCGTGGCCTCGATGTTCTCACCAACAAACACCCCCTCTCTGATCAAAACGGAGTGCCGCACCATCTCTTAGGTACCGTGAATCCAGATGTGGAATTCACAGCCAAAGCTTTTCGGGATTCTGCTATTCCCATCATCGATGCCATATTGGCTCGCAACCACTTGCCCGTTATAGTTGGGGGCACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGATTCGGCAGATGACATGAAAGAAAGCTGTTTGGGCGACCCACCTGGGCAGAAGTGGGGTCAAGTTGATAGCTTAAGATATGATTGCTGTTTTATATGTGTGGACGCATCTCTCCCTGTACTGGACAGATATGTCGATCATAGAGTGGATTGCATGATTGATGCTGGACTACTCAATGAAGTCTATAACATTTATAATCTTCATGCAGATTATTCTAGAGGTTTACGGCAGGCCATTGGTGTCCGTGAATTTGAGCTTCTTCTTAGAACTTTTGTTGTTGAAAACATCTCTAAAAGAGAGAAGGAATTAACAGAGAGATCCAGCATAGAGAAGCATGAGACATTGTTCAATGGTAATGTGATGGAGTGGTTGAGGTCTTCCTCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATAGAAAAAGTAAAACTTAATACCCGAAGACTTGTTCGCCGTCAGATATGCAAGGAAACTGAAAGCAAATCAGATGATGTATGGAGAGGCCAAGTGGTTGAATCTGCCAAGAAGATAATTAAAACTTTCCTCAGTGAGGATGGAAGCTTGTCATCCACCTTTGGCATGTCAAATGACACCGGGATGAAATTAAACCAAAGGGATCTCTGGACTCAATACATATGCAAGGCCTGCGGTGATCGGGTGCTTCGAGGATTACATGAATGGGAACAACATAGACGAGGTCGTGGGCACCGAAAACGTATTTCTCGTATCAAGAGCAAGGAACAAGGTCATGGTTTCGTGGAACAAAAGCTGGAGTATTCTGAGTGTAAAACTGCGAATAGTTAG 1194 0.4472 MAPEDTVTSNPSHGERPKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKHPLSDQNGVPHHLLGTVNPDVEFTAKAFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSPFLLDDSADDMKESCLGDPPGQKWGQVDSLRYDCCFICVDASLPVLDRYVDHRVDCMIDAGLLNEVYNIYNLHADYSRGLRQAIGVREFELLLRTFVVENISKREKELTERSSIEKHETLFNGNVMEWLRSSSDTKSIILLEEAIEKVKLNTRRLVRRQICKETESKSDDVWRGQVVESAKKIIKTFLSEDGSLSSTFGMSNDTGMKLNQRDLWTQYICKACGDRVLRGLHEWEQHRRGRGHRKRISRIKSKEQGHGFVEQKLEYSECKTANS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi11g00011 397 Gene3D Classic Zinc Finger 337 382 - -
Sebi11g00011 397 Hamap tRNA dimethylallyltransferase [miaA]. 19 309 IPR018022 GO:0008033
Sebi11g00011 397 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 311 IPR039657 -
Sebi11g00011 397 FunFam tRNA dimethylallyltransferase 336 379 - -
Sebi11g00011 397 Gene3D - 17 336 IPR027417 -
Sebi11g00011 397 Pfam IPP transferase 153 284 - -
Sebi11g00011 397 Pfam IPP transferase 52 126 - -
Sebi11g00011 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 197 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi11g00011 Sebi-Chr11 244102 247958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi11g00011 145 377 C2H2 Transcription Factor Family AT2G27760 43.651 5.32e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi11g00011 K00791 - qsu:111983693 409.453