Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi119g00023 ATGGAGTTCGTTGGCAAAAGCGTTAAGAAAGAGGTGAAAGGAGCTGGGATTGTTTCGGGAACTGTGAAATCCTACGATCCTTCCTCGGGTTTTTTCGAGATCCTCTACGAAGATGGTGATTCCGAGGAGTTGGAATCCTCTGACGTGGCTTCGCTTTTGGAATTTCAACCGGAGCTTGCCAAGGCCAAGCCTCGGGTCGGCCGGAAACCCAAGAAGCGCCGTCGGGTCGAGCGGAAGCGCGAAACAACGACGGTTTCAGATAATTTGAATAAGAGTGTCTCTGCTAATGGGAATTGTGTTAAAGATGGGCTTGATTTGAATGCTGGGCTTAATCTGAACGAGGATATTAATTTGAATGATGTGTGTGGTTCGCCTTTTGACATTGGGGGTAGTTTGAAGAGAAGAGACTGCATTGACTTGAATTTGGATGTGAGTAATGAGGACGATGTCAATGCGGGAGGGGAAACATTGCAGCGGGAATGTAAGTTTGACTTGAATGTGGAGGTATGTGAAGAAGTGAAGGAAGCTCAGGGTGATGGTGACGGAAATGGATATTCTGAGGTAGATGCTTTGATGGGTAAGACGGGGCAACTCCAAGAGGAAGAGACAAATATTAATCATAGATCTATAGAAGATGATGATGTTCATGGTAATTTGAATCATGTCTCTGATGCTGTCAAACTGGAGGAAGTTCAGGTTTCCGTCGAACATGCAGCTAAAGATGCTTCTTTGTGTTCGATTGAGGGAAAGGAAGGCAATGATGGCAAAAAAACTGCAGCAGCTATTGATTCTCTAAAGATTTCTAATGCTATTGTTAGGGATTGTGATTCTGTTTCTTTGGAGGACAAGCAAACAGATTGTCCTTCTGAAGCTGATTTTGCCACAGTTCATGAATACCAAGATGATCCAGGAAGTCCAATCAAACAAGGAAGTGGCCGGAGGAAAAGAAGAAAAGTATCGGATAATCTAAAAGCCACCCCAGAGACGGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTAAAAAACAGGTTTTAAGCACCATATCAGTGCAGGTGACTGATGATCCTTTGTTGTCCTTGGGAACCGGTGCCTTAACAGAAGAAAAACCTTTAATGCCTGGTTCTGAGAAATCTGAACAATGCAATGTTACTCTTCCAAAGCTGCAATTACCCCCTTCTTCTCAAAGTTTGAATTTAGATGATGTTCCTGTTCTTGAACTTTTTTCTGTTTATGCCTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCAATAAAGTCTGAAAGCCCAACTATGTTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTTAGAAAGCATTTGGAACACCTTTCCAATGAGGGTAGCCAATCTGCATCCAATTGCCTGAGGAATGTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATTCATGCTTCAGGGTTTAAAACTGGATTTGATCTTAATCACTTAATGTTTAGAACTGACTACTACAAACAACCTGTAGTTTTGAAGGTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACTGGTATGGGATTTGATCAGAATGTTTATTTTGACACTTGCAAAAAAAGAAGAGCTGTAGTGGATGTTTCTGGTGGCTCTTGCTTGACTGAAGAGATTGTAGATGACCCAACTGACTGGAACAGTGATGAATGCTGCCTTTGCAAAATGGATGGGAATTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGCATTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAAGGCTTGGATGAAATCACAAAGGTCACTCCGAGGAGGAGACTTGTTAGGGATTGATCTTCATGGCCGTCTTTATTTTAACAGCTGTGGTTACTTGTTAGTGTCAAACTCATCTGATCCAGGATCCTCATTCAATTACTACCACAGAAATGATCTACATGTTGTCATTGAAGTTCTAAAGTCTATGGATTCTTCATATGGAGCCATATTAATGGCTATCTACAAGCATTGGGATATCCCTACTGAAGTAAGTGTGGGGGCCAGTAACTTGGTAGTCTTAAATCAAAGTTCCTGCAGGGACAAGCAGACGACAGGTGAATATTCTGCTGTGCATACATCTTTAGCACCTTTTACTTCCGAAACTTGTATGGATAAGAATCAGGTTGATGATCAAAGAAAGATGGATGAAAATTCAACAATTCACTGTTATACTAATCATGGCCAAGAATTTCCAAAAGCCGCGAACCGCTTAGACTCAATGACAACTATAGAAAGTGCTTGTATTGCTTCAGAAGGATCAGCCAATACCACACAAATGAAATCAGGCATTGAGAATGTTCAAATGCATGGGCTTTATGATTCCAATAGATCTGATGAATCCTTGAATCTGTCAGGAGTACCAGAAAAAAACTGTCCCGTTGGTGGCTGTTCTTTGACATCTTCCAGCTTAGATGTGGTACATAAAATAAGCTTAAGATCTGTAGGTGCTAGCAGTACCCCCTGCGTGGACAATAAGGATACGTCAGAAGCAACTTGTGGGGTTAACTACATAAACTACTACAGCTTTGCCCGGGTGGCCTCATTAGTTGCACAAGAGTTGATGTGTAAGTTACCTGAAAAGATCAACAAGAATATTGCAATGTCTGAAGAAGAAATAATTTCAGACCAAGCAAAAGCCATTATGAAGAAATCCACCAACTTTTGTTGGCCAAGTATTCAAAACCAGAATGCAGCTGTACAAAAGGAAAAATGTGGGTGGTGCTTTGCTTGCAAAGTTGCAAATGATGACAGAGAATGCGTGTTCAATTCTGTGGTGAAGCCTGTTCGGGAAGTGTCTAAAAGTAGTTCAGCTGGGCTTCAACCCAGGAAGATCCAGCATGGACATCTTAGAGAGATCATATGTCTTATTTTCTCCCTTGAGGTTCGATTACGTGGGCTACTGTTGGGTCCATGGTTGAATCTGCATCAGACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGGCCTCTTGCACTTTCAGCAGATTGGTTAAAGCCTGTGGATTCTGTTGTTACTATGGGATCAGCTACTCATATTGTGGTCAGTTCATCACGCACATATTCAAGGCATGGTATTGGAAGGAAAAGGGCTAGGTATTCAGATATTGAATCCAATTCATCTTCAAACACTAATGGTGGTTTGGGAATGTTTTGGTGGAGGGGTGGTAGGCTTTCTCGAAAATTGTTTAATTGGAAGGCTTTACCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCAAGGAGAAACAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCATACATAAGATGGCATGATATTGAGAATAGCCATCCCCTGTATGTGTTGGACAAGGAATCTAGAAAATCAGTTAGGCTGTTCAAAAAAGCAATTGTGCGCAGGAAGAGCACTGATGGTCAATCTGTGAAATATCTTCTTGATTTTGGAAAGAGAAGGGCTGTTCCAGATATTGTTATTAGACATGGTTCTTTGTTGGAACAATCCTCAAGCGACAGGAAAAAATATTGGCTGGATGAGCCTTATGTTCCCTTACATCTTTTAAAGAATTTTGAGGAAAAAAGGATTGTCCGCAAGGCCAATGATAAGAAGCTCGGAAAAATTCTTGAGATTGGTAGAGTAAAGAGGGTTCCTCCTCAACAAAGGGGACTTTCATATTTGTTTTCTAGAATGGAAAGATTTGATTGTCATCAGTGTGAGCATTGCAACAGAGATGTTCCAATCAGGGAAGCTGTGAGTTGCGTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGGACTACTGAATGCACATATTCATGTCACAAATGCCAGGATGGGTTGCGTGTAAAGACTAATACTAATAGAAGGAAAGTTGACTCAAAACTGCAGAAGATTAAATCGCAGAAATGTAAAAATGTCTCTTTAGTGTGTAAATCAGTGAACCTTAAAGGCAGTAAAAAGGCATCAAGTAAGGTGCGGCAGGTGGCATCTCGTACCAATAAGAAGATCCAAGCGATTGTACCTCTTCGTCGTTCTACTAGGAAGGCAAAATCCCTGTATATGCAAAGTCAAATGATTGGAGGACGTAAAAAAGGAACGCAAAGTAAAAAGAGTGTAGGACGTAAAAAAGGAAAGCAAAATAAATCCAAGAAGGTAACCTCTCAGAAGCCGAAGGAAACTACTATTCAACGGAAGAAGTTGGCAGTAACTGCTGCATGTAAACAAAGAACGAAAATCTGTAACAGTTACTGGCTTAATGGTCTTCGGTTGTCTAGAAAGCCAAATGATGAACGTGTAATGCTGTTTAAAGAGAAAAAACATGTTGTCTCCTCCAAAGATTTTTCTGGCTCCCTTGATCTGCCTAAATGCTGCCTTTGTTGTGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATATGCGGAGACTGGTTTCATGGGGATGCTTTTGGACTCAATGTAGAAAAGGCCAAACAACTTATTGGATTTAAGTGCCATGTATGTCGTGATAGGCCTGCTCCAATCTGCCCCCATATCAAGAGTAACGCATTATCTCACACTGAAAGCAATGCTGCAATTGAGTGTGCAGAGGAATTATCTAATCCTGTATCTCTTCAACCTTTGAGTGAGGTTTGA 4980 0.4131 MEFVGKSVKKEVKGAGIVSGTVKSYDPSSGFFEILYEDGDSEELESSDVASLLEFQPELAKAKPRVGRKPKKRRRVERKRETTTVSDNLNKSVSANGNCVKDGLDLNAGLNLNEDINLNDVCGSPFDIGGSLKRRDCIDLNLDVSNEDDVNAGGETLQRECKFDLNVEVCEEVKEAQGDGDGNGYSEVDALMGKTGQLQEEETNINHRSIEDDDVHGNLNHVSDAVKLEEVQVSVEHAAKDASLCSIEGKEGNDGKKTAAAIDSLKISNAIVRDCDSVSLEDKQTDCPSEADFATVHEYQDDPGSPIKQGSGRRKRRKVSDNLKATPETVLRRSSRRASAKKQVLSTISVQVTDDPLLSLGTGALTEEKPLMPGSEKSEQCNVTLPKLQLPPSSQSLNLDDVPVLELFSVYACLRSFSTLLFLSPFELEDLVAAIKSESPTMLFDSIHVSILQTLRKHLEHLSNEGSQSASNCLRNVNWDFLDLVTWPIFMAEYLLIHASGFKTGFDLNHLMFRTDYYKQPVVLKVEILQYLCDDMIEAEAIRSELNRRSLVTETGMGFDQNVYFDTCKKRRAVVDVSGGSCLTEEIVDDPTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECAIGTHKAWMKSQRSLRGGDLLGIDLHGRLYFNSCGYLLVSNSSDPGSSFNYYHRNDLHVVIEVLKSMDSSYGAILMAIYKHWDIPTEVSVGASNLVVLNQSSCRDKQTTGEYSAVHTSLAPFTSETCMDKNQVDDQRKMDENSTIHCYTNHGQEFPKAANRLDSMTTIESACIASEGSANTTQMKSGIENVQMHGLYDSNRSDESLNLSGVPEKNCPVGGCSLTSSSLDVVHKISLRSVGASSTPCVDNKDTSEATCGVNYINYYSFARVASLVAQELMCKLPEKINKNIAMSEEEIISDQAKAIMKKSTNFCWPSIQNQNAAVQKEKCGWCFACKVANDDRECVFNSVVKPVREVSKSSSAGLQPRKIQHGHLREIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLPVKRLLLLLESNLRPLALSADWLKPVDSVVTMGSATHIVVSSSRTYSRHGIGRKRARYSDIESNSSSNTNGGLGMFWWRGGRLSRKLFNWKALPRSLVTKAARQAGCTKIPGILYPENSDFARRNRYVAWRAAVEMSTSVEQLALQVRELYSYIRWHDIENSHPLYVLDKESRKSVRLFKKAIVRRKSTDGQSVKYLLDFGKRRAVPDIVIRHGSLLEQSSSDRKKYWLDEPYVPLHLLKNFEEKRIVRKANDKKLGKILEIGRVKRVPPQQRGLSYLFSRMERFDCHQCEHCNRDVPIREAVSCVHCKGYFHKRHVRKSGGTRTTECTYSCHKCQDGLRVKTNTNRRKVDSKLQKIKSQKCKNVSLVCKSVNLKGSKKASSKVRQVASRTNKKIQAIVPLRRSTRKAKSLYMQSQMIGGRKKGTQSKKSVGRKKGKQNKSKKVTSQKPKETTIQRKKLAVTAACKQRTKICNSYWLNGLRLSRKPNDERVMLFKEKKHVVSSKDFSGSLDLPKCCLCCGDGCTLNYIACEICGDWFHGDAFGLNVEKAKQLIGFKCHVCRDRPAPICPHIKSNALSHTESNAAIECAEELSNPVSLQPLSEV 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi119g00023 1659 MobiDBLite consensus disorder prediction 1482 1499 - -
Sebi119g00023 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 657 IPR013083 -
Sebi119g00023 1659 MobiDBLite consensus disorder prediction 1461 1509 - -
Sebi119g00023 1659 CDD PHD1_AIRE 598 640 - -
Sebi119g00023 1659 ProSiteProfiles Zinc finger PHD-type profile. 596 643 IPR019787 -
Sebi119g00023 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1565 1623 IPR013083 -
Sebi119g00023 1659 PANTHER PHD FINGER FAMILY PROTEIN 2 1622 - -
Sebi119g00023 1659 ProSiteProfiles DDT domain profile. 401 461 IPR018501 -
Sebi119g00023 1659 MobiDBLite consensus disorder prediction 63 85 - -
Sebi119g00023 1659 SMART testlast3 401 461 IPR018501 -
Sebi119g00023 1659 Pfam DDT domain 405 457 IPR018501 -
Sebi119g00023 1659 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 514 547 IPR028942 -
Sebi119g00023 1659 MobiDBLite consensus disorder prediction 293 337 - -
Sebi119g00023 1659 SMART PHD_3 598 641 IPR001965 -
Sebi119g00023 1659 SMART PHD_3 1571 1617 IPR001965 -
Sebi119g00023 1659 ProSitePatterns Zinc finger PHD-type signature. 599 640 IPR019786 -
Sebi119g00023 1659 Pfam PHD-finger 599 641 IPR019787 -
Sebi119g00023 1659 SUPERFAMILY FYVE/PHD zinc finger 1569 1623 IPR011011 -
Sebi119g00023 1659 SUPERFAMILY FYVE/PHD zinc finger 587 649 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi119g00023 Sebi-Chr119 895212 912186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi119g00023 1 1629 PHD Transcription Factor Family AT5G12400 41.032 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sebi119g00023 DDT 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi119g00023 - - gmx:100800973 2397.47