Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi119g00007 ATGGCATCCAATATGGAAGACATGAACATGGTTGAGGGAATTACACTTCCAGGGTTCAGATTTCACCCTACAGAAGAAGAGCTTCTTGATTTCTATCTGAAAAACATGGTTGTTGGCAAGAAACTTCGTTTTGATGTCATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTGCCTGGTTCAGACAGGAAAATTGTGACCTTATCAGATCCTAAGCGCATCATAGGGTTGAGAAAGACTCTGGTTTTCTATGAGGGAAGAGCTCCAAAGGGATCCAAGACTGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGTAGATTACCTAAGGACATTGTGTTATGCAAGATATACAGAAAGGCAACTTCTTTGAAGGTGCTGGAGCAAAGGGCAGCTGAAGAGGAAGAGATGAAGCAATTGGAAGAGCAAAATGTGCCTCTGACCTTGTTGCAACATGTGGTTCCTAAGAAAGAATCTGAAATTGAAACTGAAGTAATGGTGTCTATGCCAGTGCAAGTGCCAGTAGTTCCAAAGCTAGAAAGAACAAAGAGCCAATTACTTGTGAAAGACAACAAAACTTGTGGGATATCCCTGCAATTGCCCCCTGGGAAGGACAAGTTACCAGAGCTTCAGCTGCCATTGATCACAGATTGGACCCAACTGACCCAAGACACCTTTTGGGCTCAGTTGAACAGTCCATGGCTTCAAAACTGGACTCCTTCCAACATCTTAAACTTTTAG 750 0.4293 MASNMEDMNMVEGITLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHDPWDLPGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPKGSKTDWVMNEYRLPDNCRLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQLEEQNVPLTLLQHVVPKKESEIETEVMVSMPVQVPVVPKLERTKSQLLVKDNKTCGISLQLPPGKDKLPELQLPLITDWTQLTQDTFWAQLNSPWLQNWTPSNILNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi119g00007 249 Pfam No apical meristem (NAM) protein 17 64 IPR003441 GO:0003677|GO:0006355
Sebi119g00007 249 Pfam No apical meristem (NAM) protein 63 105 IPR003441 GO:0003677|GO:0006355
Sebi119g00007 249 Gene3D NAC domain 66 127 IPR036093 GO:0003677|GO:0006355
Sebi119g00007 249 SUPERFAMILY NAC domain 7 123 IPR036093 GO:0003677|GO:0006355
Sebi119g00007 249 Gene3D NAC domain 24 65 IPR036093 GO:0003677|GO:0006355
Sebi119g00007 249 Coils Coil 126 147 - -
Sebi119g00007 249 ProSiteProfiles NAC domain profile. 1 123 IPR003441 GO:0003677|GO:0006355
Sebi119g00007 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 62 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi119g00007 Sebi-Chr119 289643 291346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi119g00007 10 243 NAC Transcription Factor Family AT2G17040 49.286 9.75e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi119g00007 NAM 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi119g00007 - - gmx:732555 344.354