Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi119g00005 ATGGCTTTCATTAATCTTTGTTTCTTCATTTTCCTTCTTGCTTCATCTGCTTCTGCTTGTGATCGCTGCATCCACCAAACCAAAGCTGCCTATTTCTCCAAAGCCTCTGCTCTTTCATCTGGGGCATGTGGGTATGACTCTTTGGCATTGGGATTAAGTGGTGGACACCTTGCTGCTGGTGTGCCTTCTCTCTTTAAAGATGGAGCTGGTTGTGGTGCTTGTTTTCAGATAAGATGCAAGAACCCAACTTTATGCACAAAAGAAGGGACCAGAGTGGTGTTGACTGATCTTAATCACAATAATGAAACTGATTTTGTTCTCAGCAGCAGAGCCTTTGCAGCCATGGCTCAGAAGGGGATGGGCCAACAGATTTTGAAGCTTGGCATTGTTGACATTGAATACAAAAGAGTACCTTGGGGTCAAACAGAGATAGTAGGAGTTGATGTTGCTCAGGTTGGATCTTCAAATTGGAGTTTCTTGAGCAGAAATCATGGGGCAGTGTGGGATACAAGCAGGGTTCCACAAGGTCCATTGCAATTCAGGTTTGTGGTAACTGCAGGGTATGATGGTAAATGGATTTGGGCACAAAAGGTTCTACCTGCTGATTGGAAAAATGGGGTGATATATGATTCTGGTGTTCAGATAACAGACATTGCACAAGAAGGTTGTTCCCCTTGTGACAATGGGACCTGGTCATGA 699 0.4421 MAFINLCFFIFLLASSASACDRCIHQTKAAYFSKASALSSGACGYDSLALGLSGGHLAAGVPSLFKDGAGCGACFQIRCKNPTLCTKEGTRVVLTDLNHNNETDFVLSSRAFAAMAQKGMGQQILKLGIVDIEYKRVPWGQTEIVGVDVAQVGSSNWSFLSRNHGAVWDTSRVPQGPLQFRFVVTAGYDGKWIWAQKVLPADWKNGVIYDSGVQITDIAQEGCSPCDNGTWS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi119g00005 232 SUPERFAMILY Barwin-like endoglucanases 9 140 IPR036908 -
Sebi119g00005 232 PANTHER EXPANSIN-B3 140 214 - -
Sebi119g00005 232 SMART dpbb_1 58 134 IPR007112 -
Sebi119g00005 232 CDD DPBB_EXLA_N 15 138 - -
Sebi119g00005 232 Gene3D - 135 216 IPR036749 -
Sebi119g00005 232 Pfam Expansin C-terminal domain 140 200 IPR007117 -
Sebi119g00005 232 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Sebi119g00005 232 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Sebi119g00005 232 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Sebi119g00005 232 FunFam Expansin-like A2 13 140 - -
Sebi119g00005 232 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 138 IPR007112 -
Sebi119g00005 232 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 140 211 IPR007117 -
Sebi119g00005 232 Gene3D - 13 134 IPR036908 -
Sebi119g00005 232 SUPERFAMILY PHL pollen allergen 139 211 IPR036749 -
Sebi119g00005 232 Pfam Lytic transglycolase 58 134 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi119g00005 Sebi-Chr119 205170 206826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi119g00005 17 232 Expansin Gene Family AT4G38400 59.109 6.77e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi119g00005 - - gmx:100819849 394.815