Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1199g00001 ATGGTACCCAAAACAGGGGAATTAAGTCTTGAAGTTTCAACAAACGACCCCGTGAGCAACATCGTTGTTGCCCAAAATCCTGAAAGGGTTGAAACAACGGTGCAGAGAAGAACCAGCTTAAGGCTTCAAAACCGGCCTAAGGCTCACTATGGCAGTGATACTAATACAAAGAGGCCAATGAATGACGCTAATGGGGACCATTCCGATGAGAAGAGAACAAAATTCAAACCTTCCATGCAACAAGAGGCATTGGCAAAAGGCGAGAATTGTCTCAGAGACACATGGTCTCGGACATGGGGCTGTGGAGGGACATGTGTGGTTAGCAGGGGTAGGGGTCATTCCAGTTCAACACTTGTTTTTGATGAACTGGACTTCAGGGGTGTTTTGGCAGTGAAAGAATCATTGAGGCTGGCCAATCTCTCGAAACTTCAATCTTCTGAGGATGAACAGAATAGTAGCAAGCAGATAGCTAAAGATTATCGAGAAGTATCCAAACTTTTAAATGCTAATAAGGTCGATAAAAATTGGGTTGTTGAGAAGCACATTCCTGGGTTTACAGTATGCGAGTATCTTGTAAAGAAGCTGAAAAGTTTGGCGATGTCGAGTGTAGAGAAGGTTGTCTGCTTTTGTGAAGGGAGTATATCTGCAGCTCCGTATATTTCTCCAAGTTTGGTTGTCAAAGACATAAGCAATGGCCAGGAAGCTATATGTATTCCTGCTACCAATGAGTATGACAATCCTCCAGTTGCACCTCCTGGTTTTACGTATATCACCTCTGTCAAAGTTGCAAGCAACGTGAAAGTCCCACATAGACCCAATGGATGCAAATGCCAAGGAACTTGTAGAAATACAAGGAATTGCTCTTGTGCCAAACATAATGGCTCCGAGTTTCCCTATGTTCGTGGTGGTGACAGGGGGAAAGGGAAAGGGGACAGACTGAAGGAAGCTAGGGATGTCTTGTTTGAATGTGGACCAAAATGTGGATGTGGACCTGATTGTGGTAACAGAATTTCTCAAAAGGGTTTGAAGTACAGGCTTGAGGTTTACCGTACTGCCAACAAAGGGTGGGCTGTTAGAACATGGGACTTTATTCCTTCTGGTGCACCAGTTTTGGAATATACTGGTGTACTTCGCAGAACTGATGAGTTAGATAAATTAACCGAGAATGAATATATATTTGAAATTGATTGTTTGCAAACAATGAATGAAGTAGAGGGACGGGAGAGGCGGTTGCGTAGTGTATCACTGCCTACAAAAACTTCAGCTGATGAGCCAATGAAAAACAGTCCTGAGTTCGGCATAGATGCTGAATCTTTTGGTAATGTTAGTAGGTTCATCAACCACAGTTGTGAGCCAAACCTCTTTGTGCAGTGTGTTCTGAGCTCCCACCATGATATCAGTTTAGCTCGGGTGGTGTTATTTGCTGCAGATGACATACCTCCTTACCAAGAACTGACATATGACTATGGATACATACTTGATAGTGTTGTTGGTCCGGATGGAAAAATCAAGAAGTTACCATGTCACTGTGGTACAGATGACTGCCGTAAACGCTTATACTAG 1563 0.4338 MVPKTGELSLEVSTNDPVSNIVVAQNPERVETTVQRRTSLRLQNRPKAHYGSDTNTKRPMNDANGDHSDEKRTKFKPSMQQEALAKGENCLRDTWSRTWGCGGTCVVSRGRGHSSSTLVFDELDFRGVLAVKESLRLANLSKLQSSEDEQNSSKQIAKDYREVSKLLNANKVDKNWVVEKHIPGFTVCEYLVKKLKSLAMSSVEKVVCFCEGSISAAPYISPSLVVKDISNGQEAICIPATNEYDNPPVAPPGFTYITSVKVASNVKVPHRPNGCKCQGTCRNTRNCSCAKHNGSEFPYVRGGDRGKGKGDRLKEARDVLFECGPKCGCGPDCGNRISQKGLKYRLEVYRTANKGWAVRTWDFIPSGAPVLEYTGVLRRTDELDKLTENEYIFEIDCLQTMNEVEGRERRLRSVSLPTKTSADEPMKNSPEFGIDAESFGNVSRFINHSCEPNLFVQCVLSSHHDISLARVVLFAADDIPPYQELTYDYGYILDSVVGPDGKIKKLPCHCGTDDCRKRLY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1199g00001 520 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 148 513 - -
Sebi1199g00001 520 Gene3D SET domain 219 520 IPR046341 -
Sebi1199g00001 520 SMART preset_2 226 328 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi1199g00001 520 Pfam Pre-SET motif 229 336 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi1199g00001 520 SUPERFAMILY SET domain 218 491 IPR046341 -
Sebi1199g00001 520 SMART set_7 344 496 IPR001214 GO:0005515
Sebi1199g00001 520 Pfam SET domain 355 490 IPR001214 GO:0005515
Sebi1199g00001 520 ProSiteProfiles Pre-SET domain profile. 273 341 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi1199g00001 520 MobiDBLite consensus disorder prediction 30 80 - -
Sebi1199g00001 520 ProSiteProfiles Post-SET domain profile. 504 520 IPR003616 -
Sebi1199g00001 520 ProSiteProfiles SET domain profile. 344 490 IPR001214 GO:0005515
Sebi1199g00001 520 MobiDBLite consensus disorder prediction 60 77 - -
Sebi1199g00001 520 SMART PostSET_3 504 520 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1199g00001 Sebi-Chr1199 15825 22301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1199g00001 171 520 EF-hand Containing Proteins AT5G13960 56.461 7.56e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi1199g00001 SET 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1199g00001 K11420 - lja:Lj0g3v0265609.1 535.413