Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1195g00001 ATGCAGACAGCTGCATTTGCACTGCCCACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGTGAGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGTCCATACTAACTTTAGGATGCTCAAATTCAAGGTGGGCTTCATTCAGCCCTTTTCTAATTATGATGATGAATATAGTACTTCTAATGGAAGATTGAAGATAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGAATAGAGTTATGTGCTTCTTGTGATGCTTGCAGTATGCTGTTTGGGTTTCCTCCTTGGACAATATCCTCTACTGCCTTCGGTCTTTTATACAGTTTCATCTATACATTTCCTGTGCAAGAGACTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCACGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACCATGACTGAAGAGGTGGATGAACTTATTAAACTTTCGCTGTCAAAACCCTTACGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCAACGTTGACCGAGGAGGTGGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATCTTCAGTGGAACGAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATTATTGGTGTTCAAACCGTTATCAACTTTGCATGTCCACGCGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGACGAGAAGGATATGCTGTCACATTTGTTACTGATAATGACCGGTCACTTTTAAAAGCCATTGCAAAAAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAATAATTGATCAAATGGAGGATCAAATTGCTGAAATATTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAGGAGATATTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGCTGCAACAGCAGCAAAGGTATCCATGCATAAAGGAACGAGTTCTGGGAAGGAGGTAATTAGTGCCCAAGAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAACGGGAGCGGGAGAAACATTTGCCAAGAAAGAAGCGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGACCAGGATGACAAGCCAGTAGAAGCTAAGGGAACAAATAAGAAAGAAAAGGGCGGGATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAGGGCTCTAGATTCTGGCAAGATTGTAAGGAAGAGTCAAAAGAAATCTAACAATCCTTCTCGAAAGACTCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGAGAAAAAGACAAAGAAAAGAGGTATTGGAGCAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGTATTGATTTCTTCTTGATTGAGTCATTAAAAAGTCTTAACACTTCTGAAGTTGGGTTGATGAGGCTTTTTAGAGGTCCACTTAACTAA 1923 0.4254 MQTAAFALPTLERLLFRPKREHAIRVLILTPTRELAVHTNFRMLKFKVGFIQPFSNYDDEYSTSNGRLKIVHSMIEKLAQFTDIRIELCASCDACSMLFGFPPWTISSTAFGLLYSFIYTFPVQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQIIDQMEDQIAEIFEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLAATAAKVSMHKGTSSGKEVISAQEAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEDQDDKPVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKRALDSGKIVRKSQKKSNNPSRKTPSRTEEMRELFQTDMKEKKTKKRGIGAGKKSKSSFKSKSSIDFFLIESLKSLNTSEVGLMRLFRGPLN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1195g00001 640 MobiDBLite consensus disorder prediction 501 528 - -
Sebi1195g00001 640 Coils Coil 395 435 - -
Sebi1195g00001 640 Gene3D - 2 218 IPR027417 -
Sebi1195g00001 640 CDD SF2_C_DEAD 227 359 - -
Sebi1195g00001 640 MobiDBLite consensus disorder prediction 458 528 - -
Sebi1195g00001 640 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Sebi1195g00001 640 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 3 570 - -
Sebi1195g00001 640 Pfam DEAD/DEAH box helicase 124 204 IPR011545 GO:0003676|GO:0005524
Sebi1195g00001 640 MobiDBLite consensus disorder prediction 555 608 - -
Sebi1195g00001 640 MobiDBLite consensus disorder prediction 570 593 - -
Sebi1195g00001 640 SMART helicmild6 265 350 IPR001650 -
Sebi1195g00001 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 370 IPR027417 -
Sebi1195g00001 640 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 389 IPR001650 -
Sebi1195g00001 640 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 215 IPR014001 -
Sebi1195g00001 640 SMART ultradead3 1 230 IPR014001 -
Sebi1195g00001 640 Pfam Helicase conserved C-terminal domain 247 350 IPR001650 -
Sebi1195g00001 640 Gene3D - 230 475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1195g00001 Sebi-Chr1195 12746 18667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1195g00001 132 373 Eukaryotic Initiation Factors Gene Family AT5G11170 31.967 1.62e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1195g00001 K13181 - gmx:100791233 803.127