Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi118g00052 ATGCAATCAACCACGTGGAATAGCATGCCGAACAACAGTAAAAATTCGGTAACGAGTCTTGACCCAATGTCAATGTCACCCCCACAACTTGCTAAAGGAAGCGAATTCATTCCTTCTGCCCAAACCTTGAGTGAGACAATGCTACAACAAGGACACATGGAAAATCTCAATCGGGCAGCAAGCTTTAACAACACTTTCGCTGGAACAAATGAGATTAATCATGAAGTCATAGAACCAATCAAGCAAAAAAGATGCAGTAAGACTCGTTATGAAGCCTTTGTATGGGAGTCCATATCAAAAGGAAAAGGGAGATCAGGGGGTTATGCGACCCAGGATGAAGCAGCCAGAGCACACAACTTGGTGGCAATTAAGATATGGGGAACGTGTGCTCGTACAAATTTTCCGGTGACTTGCTATGTGAATGAAATCAATGAGATGAAACATCTTAGCAGAGAGGAATGGATTCTTGCGGTCCAACAAAAGAGTGAGCCCAATTCCTCCAAGTCTGCAAACAATGAGGAGGAAATGACCAACGCATCTAATATTGTAGTGTATGATGCTGAAAAAATGGACAGTGAAGCATATGTTGCTCCTTATGCAACACAGCATGGAGTTAATACAATTAGTAACAGTTCTATTGTTGGTGGATTCAATGGTATTGACTCTGGAGCAATGTTTCCAAACATGGAACAAGCAATGTTTCAGGGGACTAGCCTGCAGGCACCACAAGCCACCTTGCTGGAGACAGGTAATATGTTTTATGAGAATAATAACCTTTTCAATAACCAATCTCTATTCCAAAGCCCTCCTCCCTTTCTACAAAGTGTTGACCTAAGTTTCCCTCATTGGCCATCTAATTTTGGAAATCTAGTTGAGGGTACTTTAGGCAATTCCTTGATTAGTAGGCCATATCACATGGGGAATGAAAATCCAGCTGGAGGAATAGGAAGTGGTACTGTTGGTTTCCAAAGTTATGAACCTTCCATGTATGGTTTGGACCAAGCCCCACTTCTGAACTTCCCTAATGATTTCCAGAACAATGGTTTCCAAGGTGATCCAATGATTGGAAGTTCAAACAATTTTGACATGAGCCAATTTCCCAACAGCTCTAATAATTACATGGAGGAGAATATGGATTCAATTTTGGCACAGATGAACAGTGGAAATGACATGTTTCCTTCTAGTAATTTGGGATTTGGAGGAAATGGAATGTTGTGA 1218 0.413 MQSTTWNSMPNNSKNSVTSLDPMSMSPPQLAKGSEFIPSAQTLSETMLQQGHMENLNRAASFNNTFAGTNEINHEVIEPIKQKRCSKTRYEAFVWESISKGKGRSGGYATQDEAARAHNLVAIKIWGTCARTNFPVTCYVNEINEMKHLSREEWILAVQQKSEPNSSKSANNEEEMTNASNIVVYDAEKMDSEAYVAPYATQHGVNTISNSSIVGGFNGIDSGAMFPNMEQAMFQGTSLQAPQATLLETGNMFYENNNLFNNQSLFQSPPPFLQSVDLSFPHWPSNFGNLVEGTLGNSLISRPYHMGNENPAGGIGSGTVGFQSYEPSMYGLDQAPLLNFPNDFQNNGFQGDPMIGSSNNFDMSQFPNSSNNYMEENMDSILAQMNSGNDMFPSSNLGFGGNGML 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi118g00052 405 ProSiteProfiles AP2/ERF domain profile. 65 135 IPR001471 GO:0003700|GO:0006355
Sebi118g00052 405 MobiDBLite consensus disorder prediction 1 32 - -
Sebi118g00052 405 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 167 - -
Sebi118g00052 405 MobiDBLite consensus disorder prediction 1 25 - -
Sebi118g00052 405 SUPERFAMILY DNA-binding domain 85 136 IPR016177 GO:0003677
Sebi118g00052 405 Gene3D AP2/ERF domain 80 137 IPR036955 GO:0003700|GO:0006355
Sebi118g00052 405 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi118g00052 Sebi-Chr118 1821331 1824828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi118g00052 89 162 AP2-EREBP Transcription Factor Family AT3G20840 42.683 1.23e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi118g00052 K09285 - gmx:102665149 107.457