Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi118g00035 ATGTCACTGAAAAGCATAGTTCGTGAACTCAAGGAGATCAGAGATGGAATAGGTAGCATATCAAGGCGGGGTGGAGAAAGCAGGCATTGGCTCAGTAGGACAAAGTCACACGTTGCTCCGGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGACAATGGGCAAATCTACCGCCAGAATTGCTTTCGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCAAGGGCTGTGGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAAAGAGATTGTCAAGACTCCTGAACAGTGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAATGCTTCATCAGGAGGAATAGAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTGCCATGGAAAGCCATTTTTGGCTTTGTTTTCCTCCTTTGGTCTGTTGATGTCTTATTGAAGTTTGATAGAATTAGTTCAAGGTCTAATTTTTTGGGTACCAAGTTCACTATACACGACAGTCAACCTCCACATGATGCTGCAATTCAACCGAATTGTCGATCTAGTAGGAGATTTAATTCTAAGCAGATGTCACCAAGAGTTCCGGCATGTAACTATCTTGTTGGTACCGTTTCCTATGAGCTGAATGTTCTCTGCACTAGAGGTCCAAGAAAAATGCACTGCATCATGAACTCTATACCTGTCTCTGCTATTCAGGAAGGGGGCAACATCCCAGCTTCAACATCTTCCCCACAAATATTCGACAAACCTTGTTCTCCCTCACCAGCACTGAAAGGAAAAGCTCCAACTACAGATGTAAACCCTGCAAGCCTATCAGAGCTACCAGTATTAAGCCAAGGCTCAGATGAGCCTTTGGTACTAAAAAACAAGTCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTGACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGATATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1191 0.4358 MSLKSIVRELKEIRDGIGSISRRGGESRHWLSRTKSHVAPDVLVTPFEPIQQGQWANLPPELLSDIIRRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPWKAIFGFVFLLWSVDVLLKFDRISSRSNFLGTKFTIHDSQPPHDAAIQPNCRSSRRFNSKQMSPRVPACNYLVGTVSYELNVLCTRGPRKMHCIMNSIPVSAIQEGGNIPASTSSPQIFDKPCSPSPALKGKAPTTDVNPASLSELPVLSQGSDEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi118g00035 396 Gene3D Tubby Protein; Chain A 171 396 IPR025659 -
Sebi118g00035 396 ProSitePatterns Tub family signature 1. 324 337 IPR018066 -
Sebi118g00035 396 CDD F-box_AtTLP-like 55 99 - -
Sebi118g00035 396 Pfam F-box domain 55 102 IPR001810 GO:0005515
Sebi118g00035 396 ProSitePatterns Tub family signature 2. 381 396 IPR018066 -
Sebi118g00035 396 Pfam Tub family 173 391 IPR000007 -
Sebi118g00035 396 Pfam Tub family 116 146 IPR000007 -
Sebi118g00035 396 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Sebi118g00035 396 Gene3D - 48 102 - -
Sebi118g00035 396 PRINTS Tubby superfamily signature 324 340 IPR000007 -
Sebi118g00035 396 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Sebi118g00035 396 PRINTS Tubby superfamily signature 374 396 IPR000007 -
Sebi118g00035 396 PRINTS Tubby superfamily signature 353 372 IPR000007 -
Sebi118g00035 396 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Sebi118g00035 396 PRINTS Tubby superfamily signature 306 323 IPR000007 -
Sebi118g00035 396 PANTHER TUBBY-RELATED 50 394 - -
Sebi118g00035 396 SUPERFAMILY Tubby C-terminal domain-like 104 396 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi118g00035 Sebi-Chr118 1125714 1127710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi118g00035 1 396 TUB Transcription Factor Family AT2G18280 59.615 1.56e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi118g00035 Tub 1.2e-77 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi118g00035 K19600 - gmx:100805380 641.728