Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi118g00034 ATGGGAACTGATGGTTGTGAAGTTGTTGGGGCATTACCAAACTCCTTTAAGGTACATCGTAGAATGTGCACAGAACTCAAGAAATTAGTTGATAGGATCTTAAGGATATTACCGCATATAGAGGCAGCTCGCCCATCTTCATCAGGAATGCAGTCTCTATGTTTGCTAAACAGAGGAATTGATAAAGCCAAACAACTTCTGCAACATTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACAGGAGAGTCAGTACTATCAAAATGCCAAAAGGCAAAAAAATCATTAGAGAAAAGCTTAGTCCAGATTCAGGATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGAATAGTTGATGATCTTGGATGTGCAACATTTGTCCTGGACTCTGCCGAAGGAGAGGCTGGGAGGGTTATGAGAGAATTGCTCCAGCAAGGTCCTCCAACCTCAGATAATGATTCAACAGAAAACTTTGACAGTAAATCTCTTCAATTTGCAGCACTAAGACTTAATATTACATCCCCAACAACCATCTTAATAGAGAAACGATCTATTAAGAAGATGCTAGCAAATGTTGGACCAGATGAGCAAACCAAAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGATAAAGTATGGACACTTAATCACGGGAGAACAAATGGAAGTCTATTCTCGTAATGAAGGACCGGTGGAAATTGAGAACCCTGATTTTGATTCTCAATGCATCCATCATGTTATGTCAGACCCATACTTGAACCATGATCAGTATAGAACTCAGGCCAGTGAGTTGGGTAGAGTTACACCCCCTGAGGAATATACATGCCCGATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGTAACATATGAAAGGATGTGGATACAGAAATGGTTTGGTGAGGGTAATTCTATATGCCCAAAAACTAAAAAGAAACTGGCTCATATGGCATTGACTCCTAATGTTGCCCTAAAGGACTTAATATTAAAGTGGTGCGAAACTAATGGAGTGTCCATTTCTGATCCAAGTAGGCAAGCAAAAGATTTTCACTCATGGGAAGCTTCCTCCACTTCCATTAGGAGTTTTGGAAGTTCTATGAATGATTTGAACTTACCAATGGATTTTAGCAACCTCTCACTTGGATCCTTAGATAGTAGTAACGGTTCAGGTTTCTCACATGGTAAGGCGAATCATGGATTAAATTCGATGTTATTCAAGACTAGTGACAATTCTCACAGGCATCAATCTCGTAAAGAAACACATGATGCAAATCTGATGAACTTGTCTAAACTCCATGATCGTCAATGGAATTCTCAATGCCAAGTCATTGAAGATATGAAAATAGATTTAAAATACAATTCCCAAGCTCTTTGCTCTGTGTCATCTGAGAATTTCATTGACCCACTCATGAGATTTCTGAGCACTGCATATGATAAGCATGATGTAAAAGCTTTGAGAGGTGGAACTCAGTTGCTGTTGGAATTTATGAAATACTGCAGAAATGGCCTGACAAATTTTAGTGAAGATACATGCAGTATGTTGGCAAGTCTTCTTGAGTCAGAAGTGATTGGAGAAGCTCTTGCCATAATGGAAGAACTTTCTGGGTATTGGTCTGACAAAGCTAACATTGCAGCTTCTACTGCACTCACTTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAAGCTATTAGAATAATGTGTAATTTTTCATCCAATGGTGAAATTTGTGCTTGCATGGTATCTCTTGAGTGCATCCCAAATTTGCTGCCATTTTTTGAAGACAAGGCCCTTTTGAGAGACTGTGTATGTATCTTGAAAAACCTTTGTGATACCGAAGAGGGTAGGGTGTCTGTTGCTGAAACTAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACTTGCACTGTCTATTGTACTCTCTTTATGCTCTCAGCGCTTGGACTACTGTCAGATGGTTATGTATGAGGGTATTATCCCTTCTCTTGTCAATATCTCCAATAAAGGAAGTGATAGTGCAAAGGCATATGCATTTGAACTGCTCCGTCTTTTGAGAGATGTTAACAATGTTGAGAATGAAGATTGCTTTGAGCCAAATCTCAACAATTCTAGTGATTCTAATAATCACTTTCAAGAAAAAAAATCATCAAAGAAATTGATATTTCTTAAGAAACTATCACCATTCTCAAAAAACAAGAGATGA 2259 0.3856 MGTDGCEVVGALPNSFKVHRRMCTELKKLVDRILRILPHIEAARPSSSGMQSLCLLNRGIDKAKQLLQHCSESSKLYLAMTGESVLSKCQKAKKSLEKSLVQIQDMVPVMLAAEISRIVDDLGCATFVLDSAEGEAGRVMRELLQQGPPTSDNDSTENFDSKSLQFAALRLNITSPTTILIEKRSIKKMLANVGPDEQTKKMILKNLLYLLIKYGHLITGEQMEVYSRNEGPVEIENPDFDSQCIHHVMSDPYLNHDQYRTQASELGRVTPPEEYTCPISLRLMYDPVVIASGVTYERMWIQKWFGEGNSICPKTKKKLAHMALTPNVALKDLILKWCETNGVSISDPSRQAKDFHSWEASSTSIRSFGSSMNDLNLPMDFSNLSLGSLDSSNGSGFSHGKANHGLNSMLFKTSDNSHRHQSRKETHDANLMNLSKLHDRQWNSQCQVIEDMKIDLKYNSQALCSVSSENFIDPLMRFLSTAYDKHDVKALRGGTQLLLEFMKYCRNGLTNFSEDTCSMLASLLESEVIGEALAIMEELSGYWSDKANIAASTALTSVSKILDSGNKEFQRKAIRIMCNFSSNGEICACMVSLECIPNLLPFFEDKALLRDCVCILKNLCDTEEGRVSVAETKGCISSVVEILGTGSDEEKELALSIVLSLCSQRLDYCQMVMYEGIIPSLVNISNKGSDSAKAYAFELLRLLRDVNNVENEDCFEPNLNNSSDSNNHFQEKKSSKKLIFLKKLSPFSKNKR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi118g00034 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Sebi118g00034 752 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Sebi118g00034 752 SUPERFAMILY RING/U-box 261 346 - -
Sebi118g00034 752 SUPERFAMILY ARM repeat 435 704 IPR016024 -
Sebi118g00034 752 Gene3D - 431 723 IPR011989 -
Sebi118g00034 752 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Sebi118g00034 752 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Sebi118g00034 752 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Sebi118g00034 752 PANTHER U BOX DOMAIN-CONTAINING 20 707 - -
Sebi118g00034 752 CDD RING-Ubox_PUB 272 321 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi118g00034 Sebi-Chr118 1120346 1123783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi118g00034 12 713 U-box Gene Family AT4G36550 37.324 1.26e-137 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi118g00034 - - gmx:100798951 1050.43