Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi118g00025 ATGGCATCATCTTGGACTCCAAGGCAGAACAAATTGTTTGAACAAGCCCTGGCTTTATATGATAGAGAAACCCCTGACAGATGGCAGAATGTTGCCAAAGTGGTGGGAAGATCAGTTGAGGAAGTTAAAAGACACTATGAGATCCTCAAAGAAGATGTGGAACGAATTGAACATGGTCAAATCCCATTCCCTCGTTACAGAACAAACACCAACAACACCTAA 222 0.4234 MASSWTPRQNKLFEQALALYDRETPDRWQNVAKVVGRSVEEVKRHYEILKEDVERIEHGQIPFPRYRTNTNNT 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi118g00025 73 SMART sant 1 52 IPR001005 -
Sebi118g00025 73 CDD SANT 4 50 IPR001005 -
Sebi118g00025 73 FunFam Transcription factor SRM1 1 63 - -
Sebi118g00025 73 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Sebi118g00025 73 Coils Coil 39 59 - -
Sebi118g00025 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Sebi118g00025 73 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Sebi118g00025 73 Gene3D - 2 63 - -
Sebi118g00025 73 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi118g00025 Sebi-Chr118 952437 952658 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi118g00025 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi118g00025 - - lja:Lj4g3v0973380.1 142.895