Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi118g00022 ATGCCTACCACTTTGGTTTATAATAATCATCTCCCCAACAGGGACAATTCCTCTTCTTCAACTTTAGGCCAACAAATTGATCAACCTGATGCTCAAACTCACACATTAGTTTTCACTGATCCACCTCAAACTTCACATCATCTTCTTTATCCCTCACCAAACCCTGTTCAACTTCAACAACTAAACAGACCCAGAAGAGATCCAGATCTAATTCCTTCTTCTCCTATTGCTGCCACAACAACCATAACAAGCACCCCAATTGTTAACCTTCCAAGAACAACAACAACAGGAACTACTTCTACTACCCCTTTGATTAGATACAGAGAGTGTCTGAAGAATCATGCAGCTAGCATAGGGGGTCATGTTGTAGATGGATGTGGTGAGTTCATGCCAAATGGACAAGAAGGCACCCCTGAATCATTGATCTGTGCTGCTTGTACCTGCCACCGCAATTTCCACAGAAAAGAAGTTGAAGGTGAACCACAGCAACAAGTTTTCAACTATCACAGCTATTATTCCAACAAAAGCAATGGTCAGAATAGGATTCATTCTCATTCTCATCTTCAGCTTAATACTCCCCACTCTTCTCTGCACCAACATCATAGACTTCCTTCACATGGGGTCACCACCACCACCCCTTCAGCAGGGTTGATTCAACCAATGATGATGGCTTTTGGGGGAAGTACTGGAGGAGGTCCAGCTGAGTCCTCAAGTGAAGATCTTAACATGTTTCAGTCTAATGATGGAGGCCAATTATCAGTGCAGCCACCACTATCAAAGAAGAGGTTCAGGACAAAGTTCACACAGGAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAATTGGAGTGGAAGATCCAGAAACAAGATGAACAGGAATTACAGCAATTTTGTTCTCATGTTGGTCTCAAAAGAAAGGTTTTCAAGGTTTGGATGCACAATAGCAAGCAAGCCATGAAGAAGAAACAAATGTAA 975 0.4215 MPTTLVYNNHLPNRDNSSSSTLGQQIDQPDAQTHTLVFTDPPQTSHHLLYPSPNPVQLQQLNRPRRDPDLIPSSPIAATTTITSTPIVNLPRTTTTGTTSTTPLIRYRECLKNHAASIGGHVVDGCGEFMPNGQEGTPESLICAACTCHRNFHRKEVEGEPQQQVFNYHSYYSNKSNGQNRIHSHSHLQLNTPHSSLHQHHRLPSHGVTTTTPSAGLIQPMMMAFGGSTGGGPAESSSEDLNMFQSNDGGQLSVQPPLSKKRFRTKFTQEQKDKMMEFAEKLEWKIQKQDEQELQQFCSHVGLKRKVFKVWMHNSKQAMKKKQM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi118g00022 324 ProSiteProfiles 'Homeobox' domain profile. 258 322 IPR001356 GO:0003677
Sebi118g00022 324 FunFam Zinc-finger homeodomain protein 2 249 321 - -
Sebi118g00022 324 Pfam ZF-HD protein dimerisation region 105 157 IPR006456 -
Sebi118g00022 324 NCBIfam homeobox domain, ZF-HD class 260 317 IPR006455 -
Sebi118g00022 324 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 317 - -
Sebi118g00022 324 MobiDBLite consensus disorder prediction 1 27 - -
Sebi118g00022 324 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 106 157 IPR006456 -
Sebi118g00022 324 Gene3D - 246 321 - -
Sebi118g00022 324 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 107 156 IPR006456 -
Sebi118g00022 324 SUPERFAMILY Homeodomain-like 249 321 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi118g00022 Sebi-Chr118 820065 821039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi118g00022 87 324 ZF-HD Transcription Factor Family AT2G18350 47.737 5.57e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi118g00022 ZF-HD_dimer 8.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi118g00022 - - ccaj:109810490 385.185