Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1189g00001 ATGCCACCGGAGGAACTCGCAGCAGACCACGGAAGCAGTCAAATTTCCGATACAAAAATGGATGGTTCATGGGAGAGCAGTGAAAGGCCTATTTTCAGAGATATTAGACGCTATTTCTGTCAATACTGTGGCATTTGCAGGTCCAAGAAGACCCTAATTACCAATCACATCAATTCTCTTCACAAGGAGGAGGTGGAAAAAGCACGAATCCAAAGGGATCAAGAAGCAGAGGGTATAAAATTGAATACTTGTAATGAATGTGGTGCTAGTTTTAAAAAACCTGCCTACCTGTTGCAGCACATGCAAAGCCATTCGCTTGAGGTAGGGAGACCTCTTGAGAAGCTCCATCAAGGGTGCCTCAGTCACGCTCTGTTCAAAATGAGGTTGGCAAGGCCATACATTTGCACTATTGATGATTGTCAAGCAAGTTACAGAAGAAAGGATCACTTGACTCGTCATCTTCTACAGCATGAAGGGAAAATTTTTAAGTGTCCAATTGAGAATTGCAGCCGTGACTTTGCTTTCAAGGGAAACATGACAAGACATGTCAAGGAGTTCCATAGCAAAGATTCTACCTTGACTGGTTTTAAAGGTCAGAAGCAGTATGTTTGCCCAGAAATTGGCTGTGGGAAGGTTTTCAAATTTGCATCAAAGCTACAGAAGCACAAAGATTCTCATGTTAAGCTGGAGTCAGTAGAGGTAGTGTGCTTATATCCTGGGTGTATGAAGCATTTTACTAATGTCCAGTGCCTTAGAGCACACACTAAATCCTGCCATCAATATGTGACCTGTGAAACTTGTGGGAAAAAGCAATTGAAGAACAACATTAAAAGGCACCTTCGTAAGCACGAAAATGGTAGTTCATCAGAGGTGTTTCCTTGTGAATATAAGGGTTGTAGCTGCACATTGTCAAGTAAATCCAATCTTCATAAGCATGTCAAGGCTGTGCACTTGCAAGATAAACCTTTCATGTGTGGCTTTCCCGATTGTGGCATGAGATTTGCTTATAAACATGTGAGAGATAACCATGAAAAATCCGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGACAAGGGGAGGGAGGAAGAGAAAGTACCCCACAGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAACTGGAGTTGCTCATGAAAGGTATTGAGTAG 1203 0.4214 MPPEELAADHGSSQISDTKMDGSWESSERPIFRDIRRYFCQYCGICRSKKTLITNHINSLHKEEVEKARIQRDQEAEGIKLNTCNECGASFKKPAYLLQHMQSHSLEVGRPLEKLHQGCLSHALFKMRLARPYICTIDDCQASYRRKDHLTRHLLQHEGKIFKCPIENCSRDFAFKGNMTRHVKEFHSKDSTLTGFKGQKQYVCPEIGCGKVFKFASKLQKHKDSHVKLESVEVVCLYPGCMKHFTNVQCLRAHTKSCHQYVTCETCGKKQLKNNIKRHLRKHENGSSSEVFPCEYKGCSCTLSSKSNLHKHVKAVHLQDKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEEADEQFRSRTRGGRKRKYPTVEMLVRKRVAPPSQLELLMKGIE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1189g00001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 192 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 294 317 IPR013087 -
Sebi1189g00001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 231 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 204 226 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Sebi1189g00001 400 SUPERFAMILY beta-beta-alpha zinc fingers 273 331 IPR036236 -
Sebi1189g00001 400 PANTHER ZINC FINGER PROTEIN 13 393 - -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 135 157 IPR013087 -
Sebi1189g00001 400 Gene3D Classic Zinc Finger 194 261 - -
Sebi1189g00001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Sebi1189g00001 400 Gene3D Classic Zinc Finger 158 193 - -
Sebi1189g00001 400 FunFam Zinc finger 45-like 78 105 - -
Sebi1189g00001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 322 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 325 349 IPR013087 -
Sebi1189g00001 400 Gene3D Classic Zinc Finger 127 157 - -
Sebi1189g00001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Sebi1189g00001 400 SUPERFAMILY beta-beta-alpha zinc fingers 198 228 IPR036236 -
Sebi1189g00001 400 SUPERFAMILY beta-beta-alpha zinc fingers 130 159 IPR036236 -
Sebi1189g00001 400 MobiDBLite consensus disorder prediction 1 26 - -
Sebi1189g00001 400 SUPERFAMILY beta-beta-alpha zinc fingers 36 104 IPR036236 -
Sebi1189g00001 400 Gene3D Classic Zinc Finger 287 362 - -
Sebi1189g00001 400 SMART c2h2final6 202 226 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 292 317 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 38 61 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 323 349 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 162 187 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 262 283 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 82 104 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 133 157 IPR013087 -
Sebi1189g00001 400 SMART c2h2final6 234 259 IPR013087 -
Sebi1189g00001 400 Pfam Zinc finger, C2H2 type 133 157 IPR013087 -
Sebi1189g00001 400 Pfam Zinc finger, C2H2 type 202 226 IPR013087 -
Sebi1189g00001 400 Pfam Zinc finger, C2H2 type 83 104 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 164 187 IPR013087 -
Sebi1189g00001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Sebi1189g00001 400 Gene3D Classic Zinc Finger 8 109 - -
Sebi1189g00001 400 SUPERFAMILY beta-beta-alpha zinc fingers 160 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1189g00001 Sebi-Chr1189 18006 21714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1189g00001 129 352 C2H2 Transcription Factor Family AT1G72050 51.449 4.36e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1189g00001 zf-C2H2 0.0024 CL0361