Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00143 ATGGAACATCTTGATTTTGACGTGGTGAAAAGTGTGAATCCTGAGTTCAAGCAAGCTACTGTAAGGATCAATATTTACAAGCACCACAGACAGACAATTCAGTATATACTCCCACATGAGCATGAAAAGCTTTCGCAAGTTGAACTGTTGGTTGTTGATGAAGCTGCTGCTATTCCACTGCCGGTGGTGAAGTGTTTGCTTGGCCCATATCTGGTCTTCCTGTCTTCTACTGTTAATGGTTATGAAGGTACTGGACGCTCTTTATCACTAAAACTTTTGCAGCAATTGGAAAAGCAAAGCCATGTGTCTGCTAAGAGCACAGAGGATATTGGTTCTGGTCATCTTTTTAAGAAAATTGAACTGAGTGAATCCATCAGATATGCTTCTGGGGATCCAATTGAAAGCTGGCTTAACACATTACTTTGCTTAAATGTTTCAAATGCCATCCCTAATCTCAGCAGCAGGTTACCTCAACCAAGTGAGTGTGATCTATACTATGTAAATCGGGATACTCTCTTTTCCTATCACAGAGATAGTGAATTGTTTTTGCAGCGAATGATGACCTTATATGTTGCATCACATTACAAGAATTCTCCAAATGATCTGCAACTGATGGCAGATGCTCCAGCACACCACTTATTTGTACTGTTAGGACCTGTTGATGAATCAAAGAATCAACTTCCTGATATTTTGTGTGTCCTCCAGGTTTGCCTTGAGGGGCAGATATCTCATCAGTCAGCAATCCAAAGTTTGAGTAACGGTCATAGACCTTTTGGAGATCAAATACCATGGAAATTCTGTGAGCAATTCCGAGACACAGTTTTTCCTTCACTTTCAGGTGCTCGCATTGTACGCATTGCTGCACACCCTAGTTTGATGAGGTGTGGATATGGTTCACGAGCAGTTGAGCTTTTAATACATTACTATGAAGGACAACTCACTCCTATCTCTGAGATGAATGTTGAAGATGAAGTGCAGGCTCCACAAGTTAGAGTTACAGAAGCAGCAGAGAAGATGTTAGGCAAAGATTCACTAGACTTCTGGCTTCCACTTTTCGTGGCATGGAATACAAGCTTGCTATGGGGGCAAGAGCCTATGAGGACCGCTTCTAACAACTTTTCAGAGTCAGTCGGAGAATATTTATCACCACATGATATGAAGCGACTAGAGGCTTATGTTAGCAATTCTGCTGACTTTCATCTGATTTTAGATTTAGTTCCTATCCTAGCACATCTGTACTTCCAAGAAAAGCTTCCAGTTACATTATCATATGTTCAAGCTTCTGTGTTACTCTGCATTGGCCTTCAAAATCAGAACATTTCATACATTGAGGGACAAATGAGCTTGGAAAGGCAGCAGATATTGTCTCAATTTATAAAGATTATGAAGAAGTTCTACGGATATCTAAATGGCCTTGCATCCAAGAAGATTGAATCAACCTTGCCACAACAGAGAGAAATTGTATTGGAACCTCATAATGTATCACTGGATGAAGACCTCAACAACGCAGCTAAACAAGTTGAGGATGATATGAAGTCAAAAGCAGAAGTACCCATTCCTCCTGAATTGCTCCAGCAGTATGCCATTGAAGATGGAAAAATACTCTCAGATGGTCTTATTAGTGTAAAATCCAGTAGGAATGGAGCCAAGCCTGAAAAGGAGAACATAAGTCACAAGAGAGGTGTAGCTCCATCTGAGGAGCATCCAGAAAACATCATGGAAGGATTTACTGAGACACAAGTTACTACAATGGCTGTATGGGATAACTTGTTGATTGTTGGAGGCAATGACAGAGAACTTATTGTCAAGCGCATAGATCAACCTGGGTGCATGGCTTCAAACCAGAAGGGTAGTGTCAAAGTCTTTGATACAGAGAAATTTGAGCTTTTAGATGATTTCTTATTTCTCTGGCCAGTAAATAGTGCTTCATTGAGCCCCGATGGAAGGCAGCTTGTAGTTGTTGGAGACAACCCAGAAGGGAAATTGTTGGATTATGAAACCGGAAATCCTATCGCACTTTTATCTGGACAGAGTAGTGAGAGATTTTTTTCATCAGCGTGGCATCCTGATGGGTACATTTTTGCCACTGGAGACCAAGACCGAACATGTTACATTTGGGATGTTCGGAATATGTCAAAGTCAGTTGTTGTTCTTAATGGAAACGTGGGAGCCGAAGGTATTCATTCAATACGTTTCACATCTGATGGGGAATTGATGGCAATGGCTGAGGGTCGTAATTGCGTGCATCTCTATGACGTAAAGAGTGGGTTTGAGAAGGAGAAGGAGCAGGAGATGGAATTTTCTGGCTATATCTCTGGTTTATCTGTTAGTCCTGACGCAGAATCGCTTTTTATCGGTGTCGCTCTAGATAATAGCAATCCAAGCGTTTTATTGTTCAATCGATGCAGAATGTGA 2415 0.412 MEHLDFDVVKSVNPEFKQATVRINIYKHHRQTIQYILPHEHEKLSQVELLVVDEAAAIPLPVVKCLLGPYLVFLSSTVNGYEGTGRSLSLKLLQQLEKQSHVSAKSTEDIGSGHLFKKIELSESIRYASGDPIESWLNTLLCLNVSNAIPNLSSRLPQPSECDLYYVNRDTLFSYHRDSELFLQRMMTLYVASHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVLQVCLEGQISHQSAIQSLSNGHRPFGDQIPWKFCEQFRDTVFPSLSGARIVRIAAHPSLMRCGYGSRAVELLIHYYEGQLTPISEMNVEDEVQAPQVRVTEAAEKMLGKDSLDFWLPLFVAWNTSLLWGQEPMRTASNNFSESVGEYLSPHDMKRLEAYVSNSADFHLILDLVPILAHLYFQEKLPVTLSYVQASVLLCIGLQNQNISYIEGQMSLERQQILSQFIKIMKKFYGYLNGLASKKIESTLPQQREIVLEPHNVSLDEDLNNAAKQVEDDMKSKAEVPIPPELLQQYAIEDGKILSDGLISVKSSRNGAKPEKENISHKRGVAPSEEHPENIMEGFTETQVTTMAVWDNLLIVGGNDRELIVKRIDQPGCMASNQKGSVKVFDTEKFELLDDFLFLWPVNSASLSPDGRQLVVVGDNPEGKLLDYETGNPIALLSGQSSERFFSSAWHPDGYIFATGDQDRTCYIWDVRNMSKSVVVLNGNVGAEGIHSIRFTSDGELMAMAEGRNCVHLYDVKSGFEKEKEQEMEFSGYISGLSVSPDAESLFIGVALDNSNPSVLLFNRCRM 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00143 804 Pfam Helicase 17 144 IPR007807 -
Sebi117g00143 804 Gene3D - 148 349 - -
Sebi117g00143 804 Pfam GNAT acetyltransferase 2 185 335 IPR000182 GO:0016747
Sebi117g00143 804 MobiDBLite consensus disorder prediction 545 567 - -
Sebi117g00143 804 SUPERFAMILY WD40 repeat-like 578 788 IPR036322 GO:0005515
Sebi117g00143 804 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 716 IPR001680 GO:0005515
Sebi117g00143 804 PANTHER N-ACETYLTRANSFERASE 10 2 344 IPR032672 GO:0008080
Sebi117g00143 804 MobiDBLite consensus disorder prediction 547 567 - -
Sebi117g00143 804 Pfam Possible tRNA binding domain 367 532 IPR027992 -
Sebi117g00143 804 SMART WD40_4 667 707 IPR001680 GO:0005515
Sebi117g00143 804 SMART WD40_4 626 664 IPR001680 GO:0005515
Sebi117g00143 804 SMART WD40_4 758 800 IPR001680 GO:0005515
Sebi117g00143 804 SMART WD40_4 711 752 IPR001680 GO:0005515
Sebi117g00143 804 Gene3D - 8 134 IPR027417 -
Sebi117g00143 804 Gene3D - 581 802 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00143 Sebi-Chr117 1801976 1812243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00143 639 777 U-box Gene Family AT2G33340 25.850 3.26e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00143 K14521 - gmx:100812924 598.971