Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00122 ATGTTGGAATTTGGCATGGAAGAAGAGCGAAGCCTGTGTGAAGAAGGTGTGGGCAGAGAACGAAGCAACGAAGACACGAGCTTCTCACCACTTCAGGAAGAAGAAGAAGAGATCACGATGGAAGATACCACTCTCTGCTGCGAACATTTGCCAAATGGGGAATGCATTGAAGTTCATAAAGACGAAGATGGTGCACTAATTGAGTTAGATTGTCAAAATGATTTTGCTGAAGGAAGAAAGGAGTTCGTTGCACCTGCTGTCGGAATGGAGTTTGAATCTTATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTAAGGGTGAAGAATTCATGGTTTAAGCGAAATAGCAGAGAAAAAAATGGTGCGGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAATCATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTGGCGGAGTCTCAAAGATGGAGGATACTTGAGGTTACACTTGAACACAACCATGTCTTAGGTGGTAAGATACACGAACCGATTAAGAAGATGGGAACTGCAACTAAAAGGAAGTCATTGCCTAGTTCTGATGCTGAGGTGCAAACAGTCAAGTTATACCGTGCACTTGTCATAGATGCAGGAGGTAATGGCAATTCAAACTCCAGTGCAAGAGATGATAGAACTTCCTCTGAATTTTCTAATAAGTTGAACCTTAAGAAAGCTCTCCATAAGAAGCACAAGGAAGAATCTTTTTCAGATATTGAATCAAGAAGCTCAAGCCCCTTGCTGAAAACAAGATGTTCTTTTGAATCACAGCTCTCTAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTATTCGTGTTTTGGTACAACACAATTACATGTGGATGGCCACATTATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGAAGGGAAATTAAGGATTTTGAAGTTTTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGCAGTTGCTTTAACTTTTATGGATATTTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTACAAATACATTCTTTCACGGTGGAAGAAAGATTACAAGCGCCTTTATGTTCCTGATCACAGCTCTGGTAGTGCTGATGATACTAACCGTATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGAATAATTTCTCTAGATCATTACAATGTAGCGTTGCAAGCTTTTGAAGAGTCACTGAGTAAGGTTCATGAGGTAGAACAGAGACAGGAGTAA 1368 0.4028 MLEFGMEEERSLCEEGVGRERSNEDTSFSPLQEEEEEITMEDTTLCCEHLPNGECIEVHKDEDGALIELDCQNDFAEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKNGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMIRMRLAESQRWRILEVTLEHNHVLGGKIHEPIKKMGTATKRKSLPSSDAEVQTVKLYRALVIDAGGNGNSNSSARDDRTSSEFSNKLNLKKALHKKHKEESFSDIESRSSSPLLKTRCSFESQLSRMYTREIFMKFQFEVEEMYSCFGTTQLHVDGHIIIFLVKERVLIEGNRREIKDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPYKYILSRWKKDYKRLYVPDHSSGSADDTNRIQWSNQLFRSALQVVEEGIISLDHYNVALQAFEESLSKVHEVEQRQE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00122 455 Pfam FAR1 DNA-binding domain 99 182 IPR004330 -
Sebi117g00122 455 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 247 449 IPR031052 GO:0006355
Sebi117g00122 455 Pfam SWIM zinc finger 326 369 IPR007527 GO:0008270
Sebi117g00122 455 MobiDBLite consensus disorder prediction 13 28 - -
Sebi117g00122 455 ProSiteProfiles Zinc finger SWIM-type profile. 337 373 IPR007527 GO:0008270
Sebi117g00122 455 MobiDBLite consensus disorder prediction 13 37 - -
Sebi117g00122 455 SMART 26again6 348 375 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00122 Sebi-Chr117 1568507 1571403 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi117g00122 FAR1 4.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00122 - K17604 gmx:100796448 387.882