Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00102 ATGAAAGAAGGGGGTGGAAGGAAGCAGGGTGCAACCTCACCCTGTGCTGCATGCAAACTTCTGAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCCTATTTCCCTGCGGATGAACCCCAGAAGTTTGCAAATGTGCACAAGGTTTTTGGTGCTAGCAATGTTAACAAAATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCCAATGCCAGAGTCCGAGACCCTGTGTATGGGTGTGTTGGGGCCATTTCTTCTCTTCAGCAACAGATTGATGTGTTACAGACCCAATTGGCCCTGGCCCAAGCTGAAGTGGTACACCTTAGGGTGCGCCAAAATAGATGTTTTTCCAATCATGGCCTTAGATCCAATAGCCCAACTAGTAGTGGGTCCCCATCATCCAAGATCATGGACTCACAAGCTAAGCCTATTTTTGACATGGAAATTGGGGTGGACCAGGCCAGCTATGGTGGTTCAATGTGGTAA 513 0.4854 MKEGGGRKQGATSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQNRCFSNHGLRSNSPTSSGSPSSKIMDSQAKPIFDMEIGVDQASYGGSMW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00102 170 Coils Coil 93 113 - -
Sebi117g00102 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 137 - -
Sebi117g00102 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Sebi117g00102 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00102 Sebi-Chr117 1320101 1323026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00102 1 170 AS2 family AT1G31320 80.117 2.80e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi117g00102 LOB 1.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00102 - - gmx:100794219 315.464