Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00079 ATGAAGGAGAGTGGAGGCTCTCTTGGTGAAGAGAGCCTGCCCGAGACTAACAACAACAACAACAGCGAAGAAGAGAAGACCCAAACTAGTTCCTTTCTCAGTGTCCCATTTTCAGACTCATCCAACAATCAGATGGATTCTAGCAAGTATGTGAGGTATACACCTGAACAAGTAGAGGCTTTGGAGAGGGTCTATGCAGAATGTCCAAAGCCCAGTTCTTTGAGAAGGCAGCAGCTTATCAGGGAGTGCCCCATCCTCTCTAACATTGAACCCAAACAAATCAAAGTTTGGTTTCAAAATCGCAGATGTCGAGAGAAGCAGAGAAAGGAAGCTTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTCTCACATCTGGTTTATGAAAATGGATACATGAAGAACCAGATACAGACTGCTTCTGCTGCTACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACTCAGCATCCCCAGAGGGATGCAAACAACCCAGCTGGTCTTCTCGCCATTGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATAGAACATCGTGGTATCGTGACTGTCGATGCCTTGATGTCTTGAGTATAGTCCCCACTGGAAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCGCCTACAACATTGGCAGCAGCAAGGGACTTTTGGACACTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCTTTGACTTCTTCAACTGGTGGTCCCACAGGGCCTCCTCCTTCAAACTTTGTTAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCTTGTGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTTCCTGAAGTGCTGAGGCCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCTTGCAACATATAAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAACCTGCTGTCTTGAGGACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGAGTGGAAGATGTGACAATAGCCATAAACTCATCTCCCAACAAGTTTTTGGGGTCCAATTACAATTCCTCAATGTTCCCAGCATTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGGTCAGAGTGGGCTGATTATGGGGTTGATGCCTACTCTGCTGCATGTCTTAAGGCTAGTCCCTATGCAGTTCCTTGTGCAAGGCCTGGTGGTTTCCCCAGCAGCCAAGTCATTTTACCCCTTGCCCATACTATTGAGCATGAGGAGTTCCTGGAGGTAGTTCGTATAGAGGGCCATGCATTTTCGCCTGAAGATGTGGCATTGGCACGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAATCATTTGCGGATGATGCTCTTCTACTGCCTTCTGGTTTTCGCGTCATTCCTTTGGATCCTAAATCAGTTGAGTGGCATTTCTCAATTACTTCTTTGGTTTTAATGGAACTTAGTTATGATGGTCCAGCTGCAACAAGGACATTGGATTTGGCATCGACCCTTGAAGTGGGATCTGGGAATGCTCGTTCAGCTGGTGAAACTGATGCAAATGGTTACAACCTCAGGTCGGTCCTCACTATTGCATTCCAATTTACCTTTGAGAACCATATGCGAGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGATCTGTTCAGAGGGTTGCCATGGCTATTGCTCCTTCTCGCCTCAGCACCCAGATGGCGCCAAAGTCACTTCCTGGTTCACCAGAGGCTCTTACTTTAGCAAGATGGATTTGTAGAAGCTACAGGATGCACACTGGTGCAGAGCTTTTTAGAGTTGAGTCCACAGCTGGAGATGCAGTCTTGAAGCAACTTTGGCACCATTCAGATGCAATCATGTGCTGTACTGTAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGGTTAGACTTGCTTGAAACTACTCTGGTTGCACTTCAAGATATAATGCTTGACAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCACTGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCTGCAGGGATATGTGTATCCAGTATGAATAGGCCAGTGTCCTATGAGCAGGCCATTGCATGGAAGGTTCTCAACGATGATGATTCTAATCACTGCCTAGCTTTCATGTTCATGAACTGGTCTTTTGTTTGA 2682 0.4612 MKESGGSLGEESLPETNNNNNSEEEKTQTSSFLSVPFSDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKNQIQTASAATTTDNSCESVVMSGQNQQQNPTQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRTSWYRDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSVEWHFSITSLVLMELSYDGPAATRTLDLASTLEVGSGNARSAGETDANGYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQMAPKSLPGSPEALTLARWICRSYRMHTGAELFRVESTAGDAVLKQLWHHSDAIMCCTVKTNASPVFTFANQAGLDLLETTLVALQDIMLDKVLDESGRKILCTEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00079 893 SMART START_1 196 406 IPR002913 GO:0008289
Sebi117g00079 893 MobiDBLite consensus disorder prediction 168 188 - -
Sebi117g00079 893 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 45 893 IPR044830 GO:0003700
Sebi117g00079 893 SUPERFAMILY Bet v1-like 444 637 - -
Sebi117g00079 893 SMART HOX_1 46 112 IPR001356 GO:0003677
Sebi117g00079 893 Pfam Homeodomain 49 107 IPR001356 GO:0003677
Sebi117g00079 893 MobiDBLite consensus disorder prediction 10 46 - -
Sebi117g00079 893 ProSiteProfiles 'Homeobox' domain profile. 44 108 IPR001356 GO:0003677
Sebi117g00079 893 CDD START_ArGLABRA2_like 191 407 - -
Sebi117g00079 893 MobiDBLite consensus disorder prediction 1 46 - -
Sebi117g00079 893 ProSiteProfiles START domain profile. 187 388 IPR002913 GO:0008289
Sebi117g00079 893 Pfam MEKHLA domain 748 892 IPR013978 -
Sebi117g00079 893 Gene3D - 40 115 - -
Sebi117g00079 893 Pfam START domain 197 404 IPR002913 GO:0008289
Sebi117g00079 893 MobiDBLite consensus disorder prediction 168 189 - -
Sebi117g00079 893 CDD homeodomain 49 109 IPR001356 GO:0003677
Sebi117g00079 893 FunFam Homeobox-leucine zipper protein REVOLUTA 49 104 - -
Sebi117g00079 893 CDD bZIP 101 140 - -
Sebi117g00079 893 SUPERFAMILY Bet v1-like 197 408 - -
Sebi117g00079 893 Coils Coil 118 138 - -
Sebi117g00079 893 FunFam homeobox-leucine zipper protein ATHB-15 232 413 - -
Sebi117g00079 893 Gene3D - 230 413 IPR023393 -
Sebi117g00079 893 SUPERFAMILY Homeodomain-like 47 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00079 Sebi-Chr117 994219 1000054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00079 39 893 Homeobox Transcription Factor Family AT2G34710 78.555 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi117g00079 START 3.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00079 K09338 - gmx:100807428 1576.61