Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00078 ATGGCGACCTCCATTAGGCGTCGTTGCGTCGGTCATCCTCGCCACCGGCATCATGGGTTGCACCCTCTTCACTGGGCTATCACAAAGAGGATGACAGATATTGAAGAGATGGCAGGCATGGATGTGCTTTGTAGTGATAAGACTGGGACCTTCACATTTAATCAAAGACAAAGAGGAAATGAAATAAAAAGGGTTTTGACTCGTGGAGGAAGATCCGTCCAATACAATGTGTACGAAACCTTGTTTGGGGTTTCTTCCAAATACGTTCCTCCCAATCGCCCTATCGGTAGAGGCGCTTATGGCTTCGTCTGTTCTGCTGTTAATTCAAATACACACAAAGAAGTTTCCATCAAGAAGATTGGTAACGCATATGACAACATCATTGATGCTGAAAGGACTCTTAGGGAAATTAAACTGCTTCGCCACTTGGACCATGAAAATGATACTGATCTCAAGCTCTTAGTGGATCTCTTGGAAAAGGTAAGAGACTTTTCAAAACTAAGGGATATAGAAATTCTTTGCCAGGCTACAGATTTGGAGAATGAACATGTGGTTGAGATTAGGAAGGGGGGCAAGATTGCTGAACACTAA 591 0.4349 MATSIRRRCVGHPRHRHHGLHPLHWAITKRMTDIEEMAGMDVLCSDKTGTFTFNQRQRGNEIKRVLTRGGRSVQYNVYETLFGVSSKYVPPNRPIGRGAYGFVCSAVNSNTHKEVSIKKIGNAYDNIIDAERTLREIKLLRHLDHENDTDLKLLVDLLEKVRDFSKLRDIEILCQATDLENEHVVEIRKGGKIAEH 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00078 196 ProSiteProfiles Protein kinase domain profile. 89 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi117g00078 196 SUPERFAMILY EB1 dimerisation domain-like 148 185 IPR036133 GO:0008017
Sebi117g00078 196 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 87 162 - -
Sebi117g00078 196 Gene3D - 56 71 IPR023299 GO:0000166
Sebi117g00078 196 Gene3D - 41 55 IPR023214 -
Sebi117g00078 196 FunFam Mitogen-activated protein kinase 74 181 - -
Sebi117g00078 196 Gene3D - 26 40 - -
Sebi117g00078 196 Gene3D Phosphorylase Kinase; domain 1 93 173 - -
Sebi117g00078 196 Pfam Protein kinase domain 93 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi117g00078 196 SUPERFAMILY Protein kinase-like (PK-like) 93 155 IPR011009 -
Sebi117g00078 196 ProSitePatterns Protein kinases ATP-binding region signature. 95 119 IPR017441 GO:0005524
Sebi117g00078 196 Pfam EB1-like C-terminal motif 159 187 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00078 Sebi-Chr117 985401 987621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00078 62 185 MAP Kinase Gene Family AT4G11330 57.258 7.50e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Sebi117g00078 Pkinase 2.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00078 - - qsu:112002250 155.606