Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00076 ATGACATATCCCGCTCATGATCCCACAGATACTGGCACTCATAATGTTCAGTATGAAACACCTCCACAACTTGGAAGTGGGCATGCTATGGCACCCCCTGCTTACCCATATCCATATCCATACTACAGAAACATCTTTGTTCCCTGTTATGCACAACTTTATCCCCCACAACTCTATGGTGGACATCCAATGGTCCATTTTCAGTTAATGGGAGTTCAACAAGCAGGTGTTCCTTTACCAACTGGTGTAGCTGAGAAGCCTGTGTTTGTTAATGCAAAACAATATCATGGTATATTAAGACGCAGGCAGTCCCGTGCTAAAGCTGAATTAAAAAATAAAGCTTCAAGGAATAAGAAGATAATTATCAAAGGGAAGAATGTTCCTGAAAGTTGTGTTGTCAGCTGCAAACCTCTTGATGTTAATATTGATCTTCCATACTTGCATGAATCTCGACATAAAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAAGTGAGAATGAACAGGAAGAGGTTGCATCAACTGACAAATCACAATCCAATATAAATCTCAATTCTGATAAAAATGATCTTGCGCCATCAGATAAAACATCCTAA 603 0.398 MTYPAHDPTDTGTHNVQYETPPQLGSGHAMAPPAYPYPYPYYRNIFVPCYAQLYPPQLYGGHPMVHFQLMGVQQAGVPLPTGVAEKPVFVNAKQYHGILRRRQSRAKAELKNKASRNKKIIIKGKNVPESCVVSCKPLDVNIDLPYLHESRHKARGCGGRFLNSKKSENEQEEVASTDKSQSNINLNSDKNDLAPSDKTS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00076 200 MobiDBLite consensus disorder prediction 157 200 - -
Sebi117g00076 200 ProSitePatterns NF-YA/HAP2 subunit signature. 89 109 IPR018362 GO:0003677|GO:0016602
Sebi117g00076 200 MobiDBLite consensus disorder prediction 1 22 - -
Sebi117g00076 200 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 192 IPR001289 GO:0003700|GO:0006355
Sebi117g00076 200 MobiDBLite consensus disorder prediction 1 27 - -
Sebi117g00076 200 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 86 161 IPR001289 GO:0003700|GO:0006355
Sebi117g00076 200 Gene3D - 84 166 - -
Sebi117g00076 200 ProSiteProfiles NF-YA/HAP2 family profile. 84 164 IPR001289 GO:0003700|GO:0006355
Sebi117g00076 200 SMART cbf3 83 164 IPR001289 GO:0003700|GO:0006355
Sebi117g00076 200 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00076 Sebi-Chr117 962821 964837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00076 25 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 48.619 4.58e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi117g00076 CBFB_NFYA 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00076 K08064 - gmx:100809036 254.603