LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi117g00074	ATGAATAATTACCGAATGGATCTTGGGAGGCCTGCCTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAGCGATAATCGTTTTTGTGCTGATTGTAACGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATCTCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATTGAAGTTGGGGGGAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATACAAAACCCGGACCAGATGCCAGCCATGAGCAGCGTGCAAAGTTTATACGGTCAAAATATGAGTTACAAGAATTTTTGAAACCTAGTTTGCGCATTGTATCTGGAAAAAGCAATCTATCAAGTTCTTCCAAAAGTTTCATGGACAGTTTTAAAAGTACAAGTTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATTGTGAAGGTGAAAGTGATTCAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTATTTTGAACCTCGGCCAACAGACTGTCCAGACAACTGTAGTGAGGAGTAACTTGAATCCCGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGCCGCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTGAAATCTGATGACAATGCACTTGTTGAGGATAGTCCAGTCAATATTATTGATGGTAAGGTTAAACAAATGATTTCACTCAAGCTCCAGAATGTTGAATCTGGAGAAATGGAGCTAGAACTCGAGTGGATTCCTCTTGATCAATAG	981	0.3935	MNNYRMDLGRPASGRRRLKDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRAKFIRSKYELQEFLKPSLRIVSGKSNLSSSSKSFMDSFKSTSSQRMEGMVEFIGIVKVKVIQGTNLAIRDIKSSDPYVILNLGQQTVQTTVVRSNLNPVWNEEHMLSVPEHYGQLKLKVFDHDTFSADDIMGEADIDLQPLITSAMAFGDAGMFGDMQIGKWLKSDDNALVEDSPVNIIDGKVKQMISLKLQNVESGEMELELEWIPLDQ	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi117g00074	326	Gene3D	Arf GTPase activating protein	6	135	IPR038508	-
	Sebi117g00074	326	CDD	C2_ArfGAP	169	313	-	-
	Sebi117g00074	326	CDD	ArfGap	18	124	-	-
	Sebi117g00074	326	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	168	326	-	-
	Sebi117g00074	326	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	170	319	IPR035892	-
	Sebi117g00074	326	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	7	326	IPR044518	GO:0005096\|GO:0005543
	Sebi117g00074	326	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	132	IPR037278	-
	Sebi117g00074	326	Gene3D	C2 domain	168	326	IPR035892	-
	Sebi117g00074	326	Pfam	Putative GTPase activating protein for Arf	16	131	IPR001164	GO:0005096
	Sebi117g00074	326	FunFam	Arf-GAP with dual PH domain-containing protein 1	10	138	-	-
	Sebi117g00074	326	Pfam	C2 domain	170	260	IPR000008	-
	Sebi117g00074	326	ProSiteProfiles	C2 domain profile.	152	267	IPR000008	-
	Sebi117g00074	326	SMART	C2_3c	171	266	IPR000008	-
	Sebi117g00074	326	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	15	129	IPR001164	GO:0005096
	Sebi117g00074	326	PRINTS	HIV Rev interacting protein signature	46	63	IPR001164	GO:0005096
	Sebi117g00074	326	PRINTS	HIV Rev interacting protein signature	67	88	IPR001164	GO:0005096
	Sebi117g00074	326	PRINTS	HIV Rev interacting protein signature	27	46	IPR001164	GO:0005096
	Sebi117g00074	326	SMART	arf_gap_3	15	137	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi117g00074	Sebi-Chr117	939592	943960	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi117g00074	8	326	C2H2 Transcription Factor Family	AT4G21160	74.848	0.0	519

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi117g00074	K12486		-	gmx:100810806	570.081