Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00060 ATGGAGTGTAGAATGGAAATTTGGCTTTGGATATTTGAGAAATGCCAACATCCAGATGATCAGCAGAGAAGCATAATAGCTGCAGAGCTTGGTCTAGAGCCAAAGCAAGTGAAGTTCTGGTTTCAGAACAAGAGGACTCAAGTCAAGACTCAACTTGAGCGAGCAGATAACACTACTCTTCGTCTTGAGAATTCAAGGCTCCGCAGTGAAAACGACACGCTCAAAGAGGCATTGAAGAACTATGAGAAGGTGACTAAGATTCTACACAGCTTTATGAAGGAGGATCCGAAATCGTCACAAGCACCAGATCCAGTGTTGAGGTTAGGTCTCCCAACAGAATCTTCAATGGATCCATCATTCGGAAAGTCTCTGACATTAGCCATGGGAAGTGCTGCTCCTTCTTCTTCTGCTCTTCCACCACTACCACCACGTCCTCCTAATAAGAATAATCCAACCATCGGTTCATCAAGTGGTGCAAAAAAGAATAATCCAGCTGCAGGTATTGGTTCATCGAGTGGTACTGCAGCTGTTGTTCAAGATGCAAATGTGTTGCCAACACTACCTCCAGCTGTACCGAGAGCAAGGACAGAAGCGCATAAAGCGAGATTGTTAGAGACTGCACGAGCTGCTAAGGAAGAATTGGTTAAGCTTATGTGGACGAATGAGCCTTTATGGATCAAGTCTTCTTCTGCTGATAAGAGGCTTGTTCTTGATCCTGAAAACTATCAAAAGTACTTCACTCGGGCTAATAACTTCACATTAGGCTGCAAATCTCGTGTTGAAACATCCAAAGATTCACGAATTGTGAAGATTCATGCCATCAAATTGGTTGACATGCTTTTAGATACGGTGAAATGGGGTTGTATTTTCTCAACAATTATTACAAATACGCAGTCAATGGAAGTGATTGAAGTAGGTTCCCCACAAAACCGAAGTGGATCTTTGCAAATGATATATGAAGAGATGCACGTTCTTTCACCTTTAGTGCCACATCGGGAATTCTACTTGATTCGCTACTGTGAACAAGTTAAAGCTGGTATATGGGTGATAGTGAATGTATCTTTTGATCCCAAGAAGGAAGGACATCATGCTTCTACTCGTAGGTTTCCCTCTGGATGCCTCATTCACCAAATCTCTGATACCTCTTCCGAGGTAATTTGGGTTGAGCATGTGGAAGTGGACGCGAAGGTGGAAACGCACAAGATGTACAGAGAGGTTGTTAACAACGGTTTTGCATATGGAGCAGAAAGATGGCTTATGGAACTTGAAAGAACGTCTGAAAGAATAAATTGCGTTGCAGCTGGATACATACCTATGTATGACACCGGTGTGGTGGCTTCACCTGATGGAAGGAAGAGTGTGATGAGGCTTTCTCATAAAATGGTACGGAAGTTTTGTGGAAGTTTGATCATGACAAGTAAGGTGAAGTTCCCAGCACATTTTGATGAGGAGGCGGGGGAGCATTGCACTGGAGTTAGGACCACTATTCGTAAAAACCAAGACCCAAACTTGCCAAATGACATTGTTATTATTACTGTTTCTACCTCCTTTTGGCTCCCCATCCCTTCTCAGAATCTTTTCAACTTCTTTAAAGATCCTCTCAAACGTCCTCAGTGGGATGCTCTCTGCGATGGTAATGGAGTGATTGAGATAGCACACATCGCAAATGGAACTCATCCTAACAACTATATATCCATTATGCAGCCTATGCGTGTTGGCCTGAACGATGTGGTGATTCTTCAAGAAAGTTTTATAGATCCGTTGGGAGCTTACGTGGTGTATTCTCCAATTAATATGACAGATCTAAAGACGGCTGCAACTGGAGGAGATTCATCAGCGATATCAGTTCTTCCATCAGGCATTACCATCTCAGAGGACAGACTATCCTCCTCCTCCATTATGAATATTGATGTTACTGGAAAGGGAAAAGCCGTTGTTGGTAGTAGCAGTACAAGAGGTTCACTCTCCTCTATCTCTTTCCAGATACTCATGTCTGCTTCAGCTTCTGAGAATCCGGACTCTATGCCTGCTGTTACTTCACTTATAACCTCAACGATCCAAAACATCAAGGAGGCTTTGATTTGA 2085 0.4302 MECRMEIWLWIFEKCQHPDDQQRSIIAAELGLEPKQVKFWFQNKRTQVKTQLERADNTTLRLENSRLRSENDTLKEALKNYEKVTKILHSFMKEDPKSSQAPDPVLRLGLPTESSMDPSFGKSLTLAMGSAAPSSSALPPLPPRPPNKNNPTIGSSSGAKKNNPAAGIGSSSGTAAVVQDANVLPTLPPAVPRARTEAHKARLLETARAAKEELVKLMWTNEPLWIKSSSADKRLVLDPENYQKYFTRANNFTLGCKSRVETSKDSRIVKIHAIKLVDMLLDTVKWGCIFSTIITNTQSMEVIEVGSPQNRSGSLQMIYEEMHVLSPLVPHREFYLIRYCEQVKAGIWVIVNVSFDPKKEGHHASTRRFPSGCLIHQISDTSSEVIWVEHVEVDAKVETHKMYREVVNNGFAYGAERWLMELERTSERINCVAAGYIPMYDTGVVASPDGRKSVMRLSHKMVRKFCGSLIMTSKVKFPAHFDEEAGEHCTGVRTTIRKNQDPNLPNDIVIITVSTSFWLPIPSQNLFNFFKDPLKRPQWDALCDGNGVIEIAHIANGTHPNNYISIMQPMRVGLNDVVILQESFIDPLGAYVVYSPINMTDLKTAATGGDSSAISVLPSGITISEDRLSSSSIMNIDVTGKGKAVVGSSSTRGSLSSISFQILMSASASENPDSMPAVTSLITSTIQNIKEALI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00060 694 CDD START_ArGLABRA2_like 200 427 - -
Sebi117g00060 694 ProSiteProfiles START domain profile. 196 431 IPR002913 GO:0008289
Sebi117g00060 694 SUPERFAMILY Bet v1-like 198 429 - -
Sebi117g00060 694 ProSitePatterns 'Homeobox' domain signature. 26 49 IPR017970 GO:0000981|GO:0006355
Sebi117g00060 694 Gene3D - 257 424 IPR023393 -
Sebi117g00060 694 Pfam START domain 207 427 IPR002913 GO:0008289
Sebi117g00060 694 SMART HOX_1 4 55 IPR001356 GO:0003677
Sebi117g00060 694 ProSiteProfiles 'Homeobox' domain profile. 12 51 IPR001356 GO:0003677
Sebi117g00060 694 SUPERFAMILY Bet v1-like 491 626 - -
Sebi117g00060 694 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 693 IPR042160 -
Sebi117g00060 694 MobiDBLite consensus disorder prediction 92 173 - -
Sebi117g00060 694 SMART START_1 205 428 IPR002913 GO:0008289
Sebi117g00060 694 Pfam Homeodomain 12 49 IPR001356 GO:0003677
Sebi117g00060 694 CDD homeodomain 11 51 IPR001356 GO:0003677
Sebi117g00060 694 Coils Coil 57 84 - -
Sebi117g00060 694 Coils Coil 193 213 - -
Sebi117g00060 694 MobiDBLite consensus disorder prediction 150 173 - -
Sebi117g00060 694 SUPERFAMILY Homeodomain-like 9 54 IPR009057 -
Sebi117g00060 694 Gene3D - 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00060 Sebi-Chr117 822630 826510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00060 12 693 Homeobox Transcription Factor Family AT1G73360 37.826 5.81e-146 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi117g00060 START 8.4e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00060 K09338 - gmx:100794552 548.125