Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00059 ATGGATTTTCCAATGGGAGGTGCTGGTGGGTCTGGTGATGAAGACGCTCAAAACTCACACAAGGGAAAAAGACCCTCATACAAACGTCTTGATTCCACTCAAACATCCATACTTGAAAAATTCATCAAGGAATGTCCACATCCAGATGAAGCCCAACGACGTCAATTAGCTGATGAGGTTGGGCTTGAGCCCAAACAAATTAAGTTTTGGTTTCAGAACAAGAGGACTCAAATTAAGGTCCAACATGAGCGAGCAGATAACAATGCTCTTCGAGCTGAGAATGATAGGATGCTTAGCGAAAATATCCTAATGAAAGAAGCACTAAAGAATACGCTCTGCCCAGATTGTGGGGGTCCACCATTTCCTGAAGGGGAGCATGAGCTTTTCATGCAAAAAATGCAACGTGAAAATGCTAAACTAAAAGAAGAGGCTAGTCAACTTTATGAGAGGGTGTCTGACCTTCTTGCAAGGTATTTAGAGAAACACATGACAACACATGAGATACAGCAGACTTCTATTCCTATTACAGGACCTTCTTCACATGAGCTAGCACTTGATGGAAGTTCAAGTTCATCTCTCGGTCAAAGTTTCAACTTGCCCATTATGGATAATCATATATTATTCAACAACTCAATGGAAAGTTCAGATATGGAAAAAGAATTGATGTCTGAGATTGCAACTGCTGCAATGGAAGAACTAGTTAAGCTTATACGCATCAATGATCCCTTATGGGTAATCTCTTCAGCTCAAAAAGAGAAACTCACTCTTCATCGGGAAACTTATGAGAGAATTTTCCCTAAGACTAATCACATGAAAGGTGCCAACGTGCGTCTAGAATCATCAAAAGATTCAGGAATAGTGAATATTAGTGGCAAGGAGCTAGTTGACATTTTTCTAGATGCAGACAAATGGGCAAACCTTTTCCCAGCGATTGTTACAAAAGCGGAAACAATCAAAGTATTTGAAAATGGTTTGTTAGGAAATCGAAGTGGAACCTTACAAATGATGTATGAAGAAATGCATGTCCTTTCACATTTAGTGCGACCTCGTGAGTTTTACTTCCTACGTTATTGTCAACAAGTTGACATTGGGGTGTGGATGATAGCCGATGTGTCTTTTGACTCCATTCGAGTCAGCTCCCCTCTTTATCGCTCTTGGAGATATCCTTCTGGATGCATGATTCATGAAATCGCTAATGGGCGTTGCATGGTCACTTGGGTTGAACATGTGGAAGTTGATGATAAAATTCATACTCATCGACTATATAGAGATCTTGTTGGTGTCAATGTTGCATATGGAGCGGGAAGATGGATATTTGAACTTCAAAGAATGTGCGAGAGATTTGCTTCTTTTTATGTTGAAAAGATACCCGATCATAAAACTGAAGGAGCACTCTATTCACTCGAGGGGAGGAAAAGTGTAATGAAGCTTGCTCATCGAATGGTTAAGACGTTCTGTGAAAGTTTAACCATGTCAGGTCATGAGTTGGATTTTCCACATTTAACAGTGGAAAACAATAGTGGGGTTAGGGTCAATGTTCGTAAGAGCGGAGGTATAGGCCAACCAAATGGTACAATTGTTATGGTTGCTACCTCTCTTTGGCTTCCTCTCCATTACGAGAATGTTTTTGAGTTTCTCACAGATCATAAAAGACGAGCTCAGTGGGATGTTCTTGCCTGTGGAAATCCAGTACATTTGGTTGCACACATTTCAAATGGAATTCATCCGGGCAACTGTATTTCAATTATTCAGCCATTCATCCCTAGTGAGAACAACGCTGTGATTCTTCAAGAAAGTTTTATACATCCTATGGGATCATATATTGTATATGCTCCAACAGATGTAACAGCTATGAATGTGGCCATGAGGGGCGAGGACTCTTCGGTGTTATCAATTCTTCCATCAGGTTTTGTCATTTGTGCAGATGACCAACCAAAAGTAGATTTGGGAGCAATTGACAATGGAAATATTGATAGATCAGGAGGCTCATTATTGACTGTGGTTTTCCAAGTACTAGCTAGTAGTCCAGATGGAATCAACCTTTTAAATATGGAATCTGTGGCAACTGTCAACACTCTTTTAACCTCGACGGTTCAAAGGGTAAGAGAAGCTCTAAACTAG 2121 0.4036 MDFPMGGAGGSGDEDAQNSHKGKRPSYKRLDSTQTSILEKFIKECPHPDEAQRRQLADEVGLEPKQIKFWFQNKRTQIKVQHERADNNALRAENDRMLSENILMKEALKNTLCPDCGGPPFPEGEHELFMQKMQRENAKLKEEASQLYERVSDLLARYLEKHMTTHEIQQTSIPITGPSSHELALDGSSSSSLGQSFNLPIMDNHILFNNSMESSDMEKELMSEIATAAMEELVKLIRINDPLWVISSAQKEKLTLHRETYERIFPKTNHMKGANVRLESSKDSGIVNISGKELVDIFLDADKWANLFPAIVTKAETIKVFENGLLGNRSGTLQMMYEEMHVLSHLVRPREFYFLRYCQQVDIGVWMIADVSFDSIRVSSPLYRSWRYPSGCMIHEIANGRCMVTWVEHVEVDDKIHTHRLYRDLVGVNVAYGAGRWIFELQRMCERFASFYVEKIPDHKTEGALYSLEGRKSVMKLAHRMVKTFCESLTMSGHELDFPHLTVENNSGVRVNVRKSGGIGQPNGTIVMVATSLWLPLHYENVFEFLTDHKRRAQWDVLACGNPVHLVAHISNGIHPGNCISIIQPFIPSENNAVILQESFIHPMGSYIVYAPTDVTAMNVAMRGEDSSVLSILPSGFVICADDQPKVDLGAIDNGNIDRSGGSLLTVVFQVLASSPDGINLLNMESVATVNTLLTSTVQRVREALN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00059 706 SUPERFAMILY Bet v1-like 504 702 - -
Sebi117g00059 706 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Sebi117g00059 706 Gene3D - 11 99 - -
Sebi117g00059 706 CDD homeodomain 21 82 IPR001356 GO:0003677
Sebi117g00059 706 SMART START_1 224 447 IPR002913 GO:0008289
Sebi117g00059 706 Coils Coil 80 100 - -
Sebi117g00059 706 ProSiteProfiles START domain profile. 215 450 IPR002913 GO:0008289
Sebi117g00059 706 Pfam START domain 224 447 IPR002913 GO:0008289
Sebi117g00059 706 Coils Coil 130 161 - -
Sebi117g00059 706 Gene3D - 222 423 IPR023393 -
Sebi117g00059 706 SUPERFAMILY Homeodomain-like 23 89 IPR009057 -
Sebi117g00059 706 FunFam Homeobox-leucine zipper protein HDG1 10 97 - -
Sebi117g00059 706 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Sebi117g00059 706 MobiDBLite consensus disorder prediction 1 31 - -
Sebi117g00059 706 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 706 IPR042160 -
Sebi117g00059 706 SMART HOX_1 23 85 IPR001356 GO:0003677
Sebi117g00059 706 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Sebi117g00059 706 CDD START_ArGLABRA2_like 219 446 - -
Sebi117g00059 706 SUPERFAMILY Bet v1-like 216 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00059 Sebi-Chr117 804368 809527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00059 23 706 Homeobox Transcription Factor Family AT1G73360 42.917 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi117g00059 START 1.6e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00059 K09338 - gmx:100795075 904.434