Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00048 ATGATTCTGCAATTTGCATTTCATGTGAATATCATCATTTTCATAATATGGTTGATATATCCACTGGCATCCGCACAAGGTTGGATTACATCACAACCTGGTTGTAATTCGTCATGTGGAACAATTGTTATCCCTTTCCCATTTGGAATGCAAGATCCGAAATGTTATGCAGATAAATGGTTTGAAATAGAATGCAGAAACAGTTCTTCTGAAGGTGAGAAGCCTTACTTGAAGTCTTTAAATCTTGAGGTGAGATATATTTATGTGAGCCTAGGCTTGATTGATGTCATGAATCCAATTACCCATTCGAATTGCCGAAGCAATAACAAAGACAAGGCAGGCATAACCTACTTGAGAGGAAGCCCTTTTGTATATTCCCAAGAGGAAAACACATTTGTGGCAGTTGGTTGCAACAATCTTGCTTTTCTACACTCAAATGGAACAACCGTTGGTGGTTGTGTGTCCATTTGTGACGATAATGAACAAGTGGACAATAGCTTTGATTTTGCAAGTGAGGGTTGCCATGGTAGGTACTGCTGCCAGACTTCACTGCCTATGCATCTTTCAGAGTTCAACGCCACACTTGAAGATCTAAGGAGTGAAAGTAGGAGGAATCATACAGAGGAGGAGGAGGAGTGTAGTTATATGATGATTGTAAGTGATTATTGGATCTCGTTCCAGAGCAACTATATGTCTTATTTGGAAGTGGAGAGATTTAGTGAGCTGAAGAACATGGATTATGTTCCTGCGGAGCTTGAGTGGGAGATTTTGAACGAGATGCTCATCAATTCCACTCTGAAACTCCCTTCAGAAGCTCACTGCTATAAGACCAATGTCACATCTTCACAAAATAGATACTCAGGTTGGAGATGTCAGTGCCCCACAGGCTACTATGGCAATCCTTACATCTCTCGAGGCTGCACCGCTATACCAGGGTTCTTCGATAAGAATAATCAGGCGAAGAAGTGGGCTATAGTAGGAGTTTTGTCAAGTCTCGGATCCATCATTTTGCTCTTTGGTCTATGGTTGTTATATAAAGTTGTAAGGAAAAGAATGATAAAAAAACGCAGAGAAAAGTTCTTCAAAAAAAATGGTGGACTGTTGTTACAACAAAGAATGACTTCAGGAGAAGTTAATGTGGACAGAGCTATTCTGTTCAGCCTAAAGGACTTAAAGAAGGCCACTGATAACTTTAATATGAACAGAGTTCTTGGAAAAGGAGGTCAAGGTACTGTTTATAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTCAAGGTTGAAGGCAAGATTGAAGAATTCATCAATGAGTTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAGAAATTCCATTACTTGTTTATGAATTCATTCCCAATGGGGAGAAAGAACATATCTTTGCAGTTGCCAATCTTGCAAATAGATGCTTAGAGTTAAATGGGAAAAAACGACCAACTATGAAAGAAGTGACATTGGAATTAGAAGGGATCCGAGGATTGAATAAGAAGTCTGATGTGCAGCAAGACCATGAAGAAATTGAGCTTGTTGAAATTGAAGACCACCAACCTTGGACTGGATATTCCACATCAAATTCATTGCCAGCTCTAAACAGTGGAACGTGGTCCTCAAACTCCAACTCGGAGGTTATACCTATTCTTACATTACAATAA 1713 0.3917 MILQFAFHVNIIIFIIWLIYPLASAQGWITSQPGCNSSCGTIVIPFPFGMQDPKCYADKWFEIECRNSSSEGEKPYLKSLNLEVRYIYVSLGLIDVMNPITHSNCRSNNKDKAGITYLRGSPFVYSQEENTFVAVGCNNLAFLHSNGTTVGGCVSICDDNEQVDNSFDFASEGCHGRYCCQTSLPMHLSEFNATLEDLRSESRRNHTEEEEECSYMMIVSDYWISFQSNYMSYLEVERFSELKNMDYVPAELEWEILNEMLINSTLKLPSEAHCYKTNVTSSQNRYSGWRCQCPTGYYGNPYISRGCTAIPGFFDKNNQAKKWAIVGVLSSLGSIILLFGLWLLYKVVRKRMIKKRREKFFKKNGGLLLQQRMTSGEVNVDRAILFSLKDLKKATDNFNMNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKIEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGEKEHIFAVANLANRCLELNGKKRPTMKEVTLELEGIRGLNKKSDVQQDHEEIELVEIEDHQPWTGYSTSNSLPALNSGTWSSNSNSEVIPILTLQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00048 570 Pfam Protein tyrosine and serine/threonine kinase 399 476 IPR001245 GO:0004672|GO:0006468
Sebi117g00048 570 Gene3D Phosphorylase Kinase; domain 1 364 471 - -
Sebi117g00048 570 Pfam Wall-associated receptor kinase galacturonan-binding 35 87 IPR025287 GO:0030247
Sebi117g00048 570 Coils Coil 192 212 - -
Sebi117g00048 570 FunFam Wall-associated receptor kinase 2 368 471 - -
Sebi117g00048 570 ProSiteProfiles Protein kinase domain profile. 398 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi117g00048 570 SUPERFAMILY Protein kinase-like (PK-like) 381 476 IPR011009 -
Sebi117g00048 570 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 477 518 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00048 Sebi-Chr117 634658 637450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00048 476 545 Receptor kinase-like Gene Family AT1G16260 37.500 2.36e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi117g00048 PK_Tyr_Ser-Thr 9.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00048 - - gmx:100798794 570.466