Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00045 ATGATAAATAAACGCAAAGAAAAGTTCTTCAAACGAAATGGAGGTTTGTTGTTAGAACAAAGATTGGGCTCTGGTGAAATTAATGTTGATAAAGTTAAACATTTCAGCTTAAAGGAATTAGAGAAGGCAACAGATTACTTCAATATCAACAGAGTACTTGGGAAAGGAGGTCAAGGTACCGTGTACAAGGGTATGCTAGTGGATGGAAAAATTGTTGCAGTAAAAAAGTTTAAGGTTCAAGGAAAGGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTATTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTTGTCTATGAATTCATTCCTAATGGTAACCTTTTCGAATATTTGCATGAACAAAATGATGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACAGAAGTTGCAGGAGCTCTATTTTACTTACACTCAGCTGCTTCTCTGCCTATTTATCATAGAGACATCAAGTCCACAAATATACTGTTGGATGGAAAGTATAGGGCAAAAGTAGCAGACTTTGGTACATCAAGAATGGTTTCCATTGACGCTACTCACCTCACCACAATAGTTCAAGGAACTTTTGGATACTTGGACCCTGAATATTTCCATACCAGTCAATTTACAGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTTGAACTTCTAACTGGGCAAAAGCCAATATCCTCCCTAAGACCAGAAGAAGCCAAAAGTTTGGCAGCATATTTCGTTCTCTTTATGGAGGAAAATCGTCTGTTTGATATTATTGATGAAAGAGTTACAAAGGAAGGGGAGAAAGAACATGTCATTACAATTGCCAATCTTGCATGTAGATGCTTAGAGTTGAATGGGAAAAAACGGCCAACCATGAAAGAAGTTACATTGCAATTAGAAGGGATCCGAAAATTGGTTGAAAGGAAGTCTAATGCACAGGAAAACCATGATGAACTTGAGCTTGCTAGAATTGAAGACTATCAATCTTGGGGTACATATTCTACTTCAAATTCAGGGCTAACTCTATCAACCTTGGAAGTTATGCCTATTATGGATGAAATTCCTTAA 1116 0.3674 MINKRKEKFFKRNGGLLLEQRLGSGEINVDKVKHFSLKELEKATDYFNINRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGKVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHEQNDDLPMTWDMRLRIATEVAGALFYLHSAASLPIYHRDIKSTNILLDGKYRAKVADFGTSRMVSIDATHLTTIVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISSLRPEEAKSLAAYFVLFMEENRLFDIIDERVTKEGEKEHVITIANLACRCLELNGKKRPTMKEVTLQLEGIRKLVERKSNAQENHDELELARIEDYQSWGTYSTSNSGLTLSTLEVMPIMDEIP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00045 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Sebi117g00045 371 SUPERFAMILY Protein kinase-like (PK-like) 31 323 IPR011009 -
Sebi117g00045 371 Pfam Protein kinase domain 48 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi117g00045 371 FunFam Wall-associated receptor kinase 2 121 338 - -
Sebi117g00045 371 FunFam Wall-associated receptor kinase 2 17 120 - -
Sebi117g00045 371 Gene3D Phosphorylase Kinase; domain 1 20 120 - -
Sebi117g00045 371 Gene3D Transferase(Phosphotransferase) domain 1 121 344 - -
Sebi117g00045 371 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 3 326 IPR045274 GO:0007166
Sebi117g00045 371 CDD STKc_IRAK 53 318 - -
Sebi117g00045 371 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi117g00045 371 Coils Coil 318 338 - -
Sebi117g00045 371 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00045 Sebi-Chr117 615333 616448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00045 9 323 Receptor kinase-like Gene Family AT1G79670 67.823 1.13e-153 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi117g00045 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00045 - - gsj:114368715 582.022