Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00035 ATGGCAAGACACTCTGTTGGTGGAAACGAAAATGGAGAAGAAGCTAGTGTGGGCAATAGTAGATACCTAAGACAAAGACAACCAAGGAACCTTAACAATGGAGGAGGGGAAGGGACTGAAGATGCTGACAATATAGATGATGCTAATATGGAGCATGGTGAGACTAATGGCCTTGTACCCACCGTGAATGATCTTGATCGACCGATGATTTCTCCATCACATGCACTTGATGATTCAAATGCAATTTATGCAATCATTTGCGACACACGCATGCTTGATTGTTGTGTTTGTTCCAAGCCTTTGAGTTATCCTGTCTTTCAGTGCCTCGATGGGCATATTACTTGTGGCACTTGTTGTCACATATTTAGGAATAAGTGCACCATATGCTTTTTGCCCAACCATAGCCGGTGTCCTGCTATAGAGAAACTCTTAGAATCTATCAAAATAGCATGCCACAATAAAAAATATGGGTGTAATTCAATAGTGAGGTATAGTGAGAAATATGCACATGAGAAGACATGTATCTTTGAACCATGTTCATGTCCCCAGGAAGGTTGCAACTTTTTTTCCAATTCCAGTGAGTTGGTCATCCACTTCAAGAACAACCATCTACTTGAGGAACCACCATTTAAATATGATGCATTTTTCACTACCTTATTACACATTAACAAGAACACTGTTGTTCTTCAAGCACTGACTGATGGAGAACTTTTTGTTATCAATAACAAGGTTGAGCCTTTAGGGAACGTTCTCACTCTATGTCACATTGGGCCCAATAAAATGAACCCACAATTTGATTTTGAAATGTCGCTCGAGTCTCAACAAGGATGGAACTCTTTATCTCTACAATCAAAAGTGATGAACACTCAATGTGGCAAACCTGATTCATCATCAATGTTCCTTTTGGTTCCGTTTGAGTTTTCTCAACCTTCTGGAGAACATGAGATAGAAATTCGCATAAGAATGATTGGTGTTGTGCAGCCTGAAGGCAACCCATAG 999 0.4004 MARHSVGGNENGEEASVGNSRYLRQRQPRNLNNGGGEGTEDADNIDDANMEHGETNGLVPTVNDLDRPMISPSHALDDSNAIYAIICDTRMLDCCVCSKPLSYPVFQCLDGHITCGTCCHIFRNKCTICFLPNHSRCPAIEKLLESIKIACHNKKYGCNSIVRYSEKYAHEKTCIFEPCSCPQEGCNFFSNSSELVIHFKNNHLLEEPPFKYDAFFTTLLHINKNTVVLQALTDGELFVINNKVEPLGNVLTLCHIGPNKMNPQFDFEMSLESQQGWNSLSLQSKVMNTQCGKPDSSSMFLLVPFEFSQPSGEHEIEIRIRMIGVVQPEGNP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00035 332 SUPERFAMILY TRAF domain-like 146 322 - -
Sebi117g00035 332 MobiDBLite consensus disorder prediction 12 34 - -
Sebi117g00035 332 Pfam Seven in absentia protein family 136 287 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi117g00035 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 73 323 IPR044286 -
Sebi117g00035 332 MobiDBLite consensus disorder prediction 1 64 - -
Sebi117g00035 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 199 IPR013083 -
Sebi117g00035 332 ProSiteProfiles Zinc finger SIAH-type profile. 146 204 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00035 Sebi-Chr117 510773 512893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00035 79 206 C3H Transcription Factor Family AT2G41980 33.588 1.45e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00035 K04506 - gmx:100778869 219.164