Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi117g00015 ATGGCAACAGCAGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGATGATCCTACGCTTCCACAACCATGGAAAGGGTTGATTGATGGAAGCACTGGTCTGTTATACTATTGGAATCCTGAAACCAATATTACACAATATGAAAAACCAGCTCCCTTGGCACCCCCGCCCCTGCCTTCGGGGCCTGCACCAGCGGCTTCTGCGCCGAGCTTGGCACCCATACCGGTGGCTCATACAATGCAGGCTGGAGGAATGGTACAACAGCATGGACAGCAGTTAATGCAAGCACAGCCCGCACAACAACAGCAGGTGAATCACCTTTCCCAACAGCATGGCCAATCTATGCCACAGCAACAGAGTCCCCTTGTCGCACAGGTCACTCAGCAGCAGCCCTCTCAGGCTCAACCTGCACAGCAGCAGAGTTCACAGCTTGCACAGTCAGTGCCGCAGCCTGGGTTACACCAACCCAGACAGCAGATGATGCATCCCCAGGGTCAACAGATGATGCAGCCTCAAGGACAGCAAATTCAGCAAATGCATCATCAGATGCCGCCACAGGCTATCCATTCCCAACATTTTGGGCAAGGAACATCACAGGATCATGGCTCGCATGCTGTACAACCACAAGCACATCAATTCACTCCCAATAACATGCATTATATGGCATATCAACAGAACATGATTGCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGTTCACATCTGGGCAACCTAACTCCCAGCAGATTCAGCATAACGCACATGGTCAGCCTTTTGAAAACCAACAAGATTATAAAGCAGCGTTTCCAAAAGTAGAGGAACCGGAGTTTAAAAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGGAGTGTCTTGCCTGTTCAAAACAGCCAGAACATTCCTGCTGAAGTTAGTTCTGGTCAAGTGCCTAATGTAGGTGTTAATGCTGGCCAACCACAACAATTCAGGGGCTTATCAGGCAGTATGCAACAATCTCCCTCAGCAATGCAGCCGCAGCAGGGTGGTTCTGAGTTATTTTACCAACATGTTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTATTGGCCAAAAAATGGGACATGAGGACAATTCACGAGGTAGAGCTGGGAATGAGTATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTCGTCAACAGCCAGATATGACACAAATGCCCATCTCAAGAAATCAGCAGGATTTGAGGATTGGCAACGCTCCTTTTCAGAATGTAATGCCTAGTGGAAATGGAAGTGGCATTGCTGGGAATGCCATGTCTAGCATGTTCACTCCTCCAATAGGAGGACCTTCACCTCTCTCACCAGCTGAAATATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCGACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCCAACCCGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGGACGGTCTTCACGAGTCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTCGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCGCGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCGGCGATCTTCTTGTCAATCCCGTTCAGGTTAACATTGGAAGTGTAGATGAGCTCGCTGCAAATAAAGCTATCACACAGTTACCAATATTATCAATTGGTATTCCATTCACTGTGACTGTTAATTGCTGTTTTCTCACAGGACTTTTGTTTTGCCATTCAATACCTGGTTTAAAGAAGTTGTCTCTTTGGTCATTGCATATATTTGACCTTCGAATTAATTTTGTAAGAGGGCGAGCCTTGGTCAATTATAAGGTTGCTGCTTGTGACCTGGTGTTCATGGGTTCAAATGTTGGAAAAAGCCTCTCTGCTCTTGAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGACGTTTGGAGCAGATCCTCAGATCTCAAGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAGAGATTATGTGATCAGCTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACAGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGAGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAATTGAGGACTACGTACACCGTATTGGAAGAACAGGAAGAGCAGGTGCCACTGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGGCAGTTGGCTTTGCGTGGGCCACCAAATTTTGGAAAGGACCGGGGTGGAATGAGCAGGTTTGACTCTGGTGGCGGTGGTGGTGGGCGCTGGGAGTCTGGTGGTCGTGGTGGTGTGAGGGATGGTGGCTTTGGTGGTCGTGGTGGGATGAGGGATGGTGGCTTTGGTGGTCGGGGTGGTGGGTTCGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCAAGGAGGGAGAGGTGATTTCTTTTCTGGTAGGGGCAATAGGGGTAGGGGATTTGGTGGCCCACGTGGTGGTCATGTTGGTTGGGGTCAGGGTGAACGTGGTCCCAATGATCGGCGTGATAGGTCAGATCAACAAATTTCTGATAAGAAGGATCTTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACCCAAGGGAATTCATCTTTGGGAACTGAACGTGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA 3327 0.4779 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNITQYEKPAPLAPPPLPSGPAPAASAPSLAPIPVAHTMQAGGMVQQHGQQLMQAQPAQQQQVNHLSQQHGQSMPQQQSPLVAQVTQQQPSQAQPAQQQSSQLAQSVPQPGLHQPRQQMMHPQGQQMMQPQGQQIQQMHHQMPPQAIHSQHFGQGTSQDHGSHAVQPQAHQFTPNNMHYMAYQQNMIASRQPNSQQIQPNMFTSGQPNSQQIQHNAHGQPFENQQDYKAAFPKVEEPEFKNGSQVGHSPSQYQQRSVLPVQNSQNIPAEVSSGQVPNVGVNAGQPQQFRGLSGSMQQSPSAMQPQQGGSELFYQHVPNFQNQMNPGMMHGHPSNVHPIGQKMGHEDNSRGRAGNEYYYNSNKEMPTMGRQQPDMTQMPISRNQQDLRIGNAPFQNVMPSGNGSGIAGNAMSSMFTPPIGGPSPLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQLPILSIGIPFTVTVNCCFLTGLLFCHSIPGLKKLSLWSLHIFDLRINFVRGRALVNYKVAACDLVFMGSNVGKSLSALEYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATVLEGANQHVLPELRQLALRGPPNFGKDRGGMSRFDSGGGGGGRWESGGRGGVRDGGFGGRGGMRDGGFGGRGGGFGGRGGMRDGAGGQGGRGDFFSGRGNRGRGFGGPRGGHVGWGQGERGPNDRRDRSDQQISDKKDLRAPEAGASDTKMFPVSPSTQGNSSLGTERVEQQPVVGSTGPDNPEVAVDLSHQPASDI 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 50 72 - -
Sebi117g00015 1108 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Sebi117g00015 1108 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 86 208 - -
Sebi117g00015 1108 CDD SF2_C_DEAD 791 911 - -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 1062 1089 - -
Sebi117g00015 1108 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 1030 1055 - -
Sebi117g00015 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 698 IPR027417 -
Sebi117g00015 1108 Gene3D - 785 930 IPR027417 -
Sebi117g00015 1108 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Sebi117g00015 1108 SMART ww_5 21 54 IPR001202 GO:0005515
Sebi117g00015 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 911 IPR027417 -
Sebi117g00015 1108 SMART ultradead3 510 713 IPR014001 -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 85 208 - -
Sebi117g00015 1108 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 448 911 - -
Sebi117g00015 1108 Gene3D - 468 703 IPR027417 -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 1 27 - -
Sebi117g00015 1108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 696 IPR014001 -
Sebi117g00015 1108 SMART helicmild6 825 909 IPR001650 -
Sebi117g00015 1108 FunFam probable ATP-dependent RNA helicase DDX17 467 699 - -
Sebi117g00015 1108 Pfam Helicase conserved C-terminal domain 801 909 IPR001650 -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 233 257 - -
Sebi117g00015 1108 Pfam WW domain 22 52 IPR001202 GO:0005515
Sebi117g00015 1108 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Sebi117g00015 1108 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 804 940 IPR001650 -
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 52 71 - -
Sebi117g00015 1108 Pfam DEAD/DEAH box helicase 515 685 IPR011545 GO:0003676|GO:0005524
Sebi117g00015 1108 MobiDBLite consensus disorder prediction 930 1108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi117g00015 Sebi-Chr117 291356 298331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi117g00015 819 909 Eukaryotic Initiation Factors Gene Family AT3G19760 47.826 4.05e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi117g00015 K12823 - gmx:100807830 1061.98