Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1176g00003 ATGAAGATATTTTACGCTAAAGAGATTCTGTGTCCATTTCTTCTGCTGTTGCTCCTTTCCCCTTCATTCCAATCACTTGACAGCATAACCCAAAACCATCCCCTGAAAGACGGCGACGTTTTGGTCTCCAAAGACCGAGGGACCTTTGCACTTGGTTTCTTCAGTCCGCGAGATTCTAGAAGCCGATACGTTGGGATATGGTACAACAAAATTGCAGAGCAAACGGTTGTGTGGGTTGCAAACAGAGACACCCCTCTGAATGACACTTCCGAAGTTCTTTCCATCAACAAAGGAAACCTCGTACTCCACCGTGGCAATAACCGAAACCTTAATCCAATTTGGTTTTCAAATGTTTCTACCTTAACTGCCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACTTGGTTTTGATCCAAAGTGAAAGGAACAGCAACGTTTTGTGGCAGAGTTTTGATTATCTCGGTAACACTTTGCTTCCGTTCATGAAGCTCGGGTTGGACCGGAAAACCGGTTTGGACCGGTTTCTTACGTCCTGGAAGTCCCCGATCGACCCAGGATCCGGGAACTTGACCTACCGGATCGACCCGACTGGGTTCCCGCAGCTGTTCCTGTACAAGAATCAAGCTCCACTATGGCGGGTCGGGTCATGGACGGGCCATAGATGGAGCGGTGTGCCTGAAATGACTCCGAATTTCATCTTCAATATTAGCTTCATCGACAATGCAGATGAAGTTTCCATAATGTATGGAGTGACGGACCCCATGGTGTTGTCGAGAATGGTGTTGGAAGAAACGGGTCACGTGAGAAGGTTAACGTGGCAACCTCATGAGGAGAAGTGGTTCCAAATCTGGTTTGCTCCGAAAGAGGAGTGCGACAACTTCAGACAATGCGGATTGAACGCGAACTGCGACCCGTATAAAGAAGACAAGTTTGAGTGCGAGTGTTTGCCTGGGTTCGAACCCAAGTCTGAGAGAGAATGGTTTCTTAGAGATGGGTCGGGTGGGTGCGTTAGGAAGCGAAGCGTATCCACGTGTCGAAGTGGGGAGGGGTTTGTGAAGGTGGCACGTGTGAAGGTACCAGATACTTCGGAGGCACGTGTGGATGAGAGACTAGACATGAGAGGGTGTAAGGAGAAATGTTTGAGGGATTGTTCTTGTGCAGCTTATACAAGTGCCAATGAGAGCTCTCAGAGTGGGTGTGTTACTTGGCATGGAGACATGGAAGATACAAGAACATACGCACAAGTGGGACAAGATCTGTATGTACGCGTCGATGCAGTTGAATTAGCTAAATATATGAAAAAACCATATGGTTCTCTTGGCAAGAAGGGGATGGTGGCCATTTTAGTCGTTGGTATATGCTTGTTATTGTTTTTTGGGATCACTTGTTTGTATTGGTTTGTAAAAGTCAGGAAACAAGTGACAAGGGATCGCAAGTTTTCATTTCGTCTTGACTTTGAGGACTCCCCAAATCATCAAGAATTTGAAAGTACGAAAAATTCAGATTTACCATTCTTTGATCTTAGCTCCATAGCTGCTGCAACAGACAATTTCTCTACAGATAACAAGCTTGGTCAAGGTGGTTTTGGTTCTGTTTATAAGGGTGTCCTGAGTAATGGAATGGAAATAGCAGTGAAGAGACTGTCAAAGTATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGATTGTTTTGATTTCAAAGCTTCAACACAGAAATCTTGTGAGGATCTTAGGTTGTTGCATTCAGGGAGAGGAGAAGATGTTAATCTATGAGTATTTGCCAAACAAAAGCTTAGACTCTTTCATTTTTGATGAGTCTAAAAGGTCAGAGTTAGACTGGGAAAAAAGATTTGATATCATCTGTGGGGTTGCTAGAGGGATCTTATACCTTCATCAAGATTCACGATTAAGAATCATTCATAGAGACTTAAAGGCCAGCAATGTCTTGCTAGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGCATGGCTAGGATATTTGGTGGAGATCAAATTGAAGCAAACACAAATCGAGTTGTTGGAACCTATGGCTACATGTCACCAGAATATGCCATGAAAGGACATTTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATTGTTACTGGCAGAAAGAATAGCATTGAATATGAGGACATTACATCCACAAGTTTAGTTGGACATATATGGGATCTATGGAGAGAAGACAAAGCTATAGAGATTATTGATCAAACATTAAGGGAGTCATGCTCTGACTACGAAGTCCAAAGATGCATCCAAATTGGGCTTTTATGTGTACAAGATTATGCCATAGACAGACCATCTATGTCAACAGTTGTTTCCATGTTGGGTAATGACTCAACTCTTCCTATTCCAAAACAACCAGCATTTATTTTCAAGAGAAATAATTGTGATAGTTCAACCAGTGAAGGAATTTATTCAGTGAATGAGGTAAGTATGACTATGATTGAAGCACGATAG 2499 0.4274 MKIFYAKEILCPFLLLLLLSPSFQSLDSITQNHPLKDGDVLVSKDRGTFALGFFSPRDSRSRYVGIWYNKIAEQTVVWVANRDTPLNDTSEVLSINKGNLVLHRGNNRNLNPIWFSNVSTLTANASAKLLDTGNLVLIQSERNSNVLWQSFDYLGNTLLPFMKLGLDRKTGLDRFLTSWKSPIDPGSGNLTYRIDPTGFPQLFLYKNQAPLWRVGSWTGHRWSGVPEMTPNFIFNISFIDNADEVSIMYGVTDPMVLSRMVLEETGHVRRLTWQPHEEKWFQIWFAPKEECDNFRQCGLNANCDPYKEDKFECECLPGFEPKSEREWFLRDGSGGCVRKRSVSTCRSGEGFVKVARVKVPDTSEARVDERLDMRGCKEKCLRDCSCAAYTSANESSQSGCVTWHGDMEDTRTYAQVGQDLYVRVDAVELAKYMKKPYGSLGKKGMVAILVVGICLLLFFGITCLYWFVKVRKQVTRDRKFSFRLDFEDSPNHQEFESTKNSDLPFFDLSSIAAATDNFSTDNKLGQGGFGSVYKGVLSNGMEIAVKRLSKYSGQGIEEFKNEIVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDSFIFDESKRSELDWEKRFDIICGVARGILYLHQDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMKGHFSIKSDVYSFGVLLLEIVTGRKNSIEYEDITSTSLVGHIWDLWREDKAIEIIDQTLRESCSDYEVQRCIQIGLLCVQDYAIDRPSMSTVVSMLGNDSTLPIPKQPAFIFKRNNCDSSTSEGIYSVNEVSMTMIEAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1176g00003 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Sebi1176g00003 832 SMART ntp_6 346 424 IPR003609 -
Sebi1176g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 151 - -
Sebi1176g00003 832 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Sebi1176g00003 832 CDD STKc_IRAK 524 789 - -
Sebi1176g00003 832 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Sebi1176g00003 832 CDD EGF_CA 290 323 - -
Sebi1176g00003 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Sebi1176g00003 832 Pfam PAN-like domain 345 409 IPR003609 -
Sebi1176g00003 832 ProSiteProfiles Protein kinase domain profile. 518 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1176g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 484 593 - -
Sebi1176g00003 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 781 - -
Sebi1176g00003 832 SMART blect_4 32 154 IPR001480 -
Sebi1176g00003 832 Gene3D - 23 151 IPR036426 -
Sebi1176g00003 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Sebi1176g00003 832 CDD PAN_AP_plant 343 424 - -
Sebi1176g00003 832 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544
Sebi1176g00003 832 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Sebi1176g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 796 - -
Sebi1176g00003 832 Gene3D Phosphorylase Kinase; domain 1 482 593 - -
Sebi1176g00003 832 Pfam Domain of unknown function (DUF3403) 791 832 IPR021820 GO:0004674
Sebi1176g00003 832 SUPERFAMILY Protein kinase-like (PK-like) 502 805 IPR011009 -
Sebi1176g00003 832 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Sebi1176g00003 832 CDD B_lectin 32 153 IPR001480 -
Sebi1176g00003 832 SMART serkin_6 518 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1176g00003 832 Pfam D-mannose binding lectin 75 180 IPR001480 -
Sebi1176g00003 832 Pfam Protein tyrosine and serine/threonine kinase 520 789 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1176g00003 Sebi-Chr1176 80847 86538 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1176g00003 506 832 Receptor kinase-like Gene Family AT4G11530 58.754 8.38e-131 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1176g00003 PK_Tyr_Ser-Thr 4.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1176g00003 - - gmx:100812814 1354.35