Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1176g00001 ATGCACTCTACTAAAAATCTCCATTGCCTTTTCATGGACCAAAATCATAAACATAAGCTACATAACAATTGGCTGCTTACCTATTCGATTCTACTGCTCCTCAGCTTCTCATTTTGCTCTTGTTCTGACACCTTATTTGCTGACAAAGTCATAACAGATGTTCTCTCAATCAACCCAGATGGGAATCTAGTGCTCCACCACAACTATAGCACCATTCCCATTTGGTTTACCAATGTATCAGCCACTCTATCCAACAGCACCAACGTTATAGCACAACTCTCAGACATAGCAAACCTTATTCTCATTCAGAACAACACCAAAACTGTCATCTGGCAAAGCTTTGATCATCCTTCAGACACCTTGCTTCCATATCAAAGACTGGGTTTTGACAGAAGAATTAACCCGAGCTGGTTCCTCCAATCCTGGAAGACAGATGATGACCCAGGAATAGGTACTTTCACATTGAAATTCAGCACAAATAGGATACCGCAGATGTTAATGTACAAACAGAACCTTCCTTGGTGGAGAGGTGGACATTGGAATGGGGAACTATTTGTGGGTACACCCAATATGAAACGAGATGGGATCACTTGTAACTTTTCTTTTGTGGAAGATGACAACTATGTAGCACTCTCATTTAACATGTTTGATAAGTCCGTTATCGCCAGGGCAGTAGTTCAGCAATCAGGTTTCTTTCAATCATTTACGTGGAATAACCAAAAGAGTCAATGGAACCGGTACTGGTCAGTACCAACAAATCAATGTGATAACTATGGAAGCTGTGGATCAAACAGTAACTGTGACCCTTTAAACTTTGAGGACTTTAAGTGTACATGTCTGCCTGGTTTTGAGCCAAAATTCCCACATGATTGGTATGAGAACAGAGATGGGTCTGGAGGGTGTGTGAGGAAGAAAGGTGCATCCATTTGTGGGAACGGAGAAGGGTTTGTCAAAATTGAAGGCTTGAAGCTTCCTGATACATCTGTGGCAATCGCCAAAAGGGGTTTGAGTTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGTACTGCTTATTCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGGAACTTAATGGACACGCTAAAACTAAGTGATCAAGGCCAAGATTTATTTGTACGTGTTGATGCAGTTGAACTAGCCAATTACTACAAAAAGAGTAAAGGAGTACTTGATAAAAAGAGGATGGTTGAATTTCTGGTAGCTTCTGTACTTACAATTGTCCTTCTCCTATCCTGTGTATATTACCTGTGGAAGAGAAAAAGAAAAGATAAGATGAGGTGGCATTTAAACCAAGATTCCCCCATAGAAGAGAACAATGTACAGAGCAACACACATCAAAATCTTCCCTTTTTCAGCCTTAAGATCATAATGGCAGCCACGAGAAATTTTTGTTATGAGAATAAGCTTGGGCAAGGTGGATTTGGCTCTGTCTATAAGGGCCACCTAGCTAGTGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAAATTCAGGTCAAGGAACAGAAGAGTTTAAAAATGAAGTTACATTACTAGTTAAACTCCAACACAGAAATCTCGTGAGGTTGCTCGGTTACTGCTTTGAGAAAGAAGAAAGGATGCTAATTTATGAATACCTACCAAACAAAAGCTTGGACTTCTTTATATTTAATGAAAACCAAAGGTCATCACTGGATTGGGGTAAGCGTTTTGAAATTATTTTTGGGATTGCTCGAGGCGTTTTGTATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAACGTTCTCCTTGATGCTGCATTGAATCCCAAAATCTCAGATTTTGGCATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGCACAAAAAGAGTGGTTGGAACATATGGCTATATGTCACCAGAGTATGCAATGGAAGGGAGATATTCAACAAAATCTGATGTCTTCAGTTATGGAGTCTTACTACTAGAGATTATTGCTGGAAAGAGGAACACAGATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGATGCTTTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTAGGCCATTCTTATCCTCCTGCTCTAGTTCTGAGGTTATGCTTTGAAGGAGAAGGCACAGAAATGCAAGAGAATAAACAAGAAAAATGCATACCTACTTGTCCTTTGTCTCCAGCCCCAAATGCATACAACTTTCCTGATTCAGTGAGTGAAAAGAGTACAGGGTTTAGATCAGCCGATTCTGTCAAGGGAAGGCTTCTCAGGTATGGTGGTGACAATATTACCCAAGGCCTTATACCCATCAGGTGTTTTTGGCACATGGTGCAACCGAATCCCCCAATTCCAAGTTACCACATGCACGTGAATCATAATCATCTGATGACGATGCCTGTCCCACATGTTTTGAAGAATATACTGATCAAAATCCTAAGATTATTGCAAAGTGCAATCACCATTACCACCTTGGTTGTATATATGAATGGAAGGAGAGAAGTGAAACCCGTCCAACTTGTAGACAGAGGAGGTGGTGGAGGTAGCTTTGGAGTTATTCTATGGTGGAAGATCAAGTTTGTTCCTGTACCACAAACTGTGACAGTTTTCACAGTGACTAAGACCTTAGAACAAGGAGGAAACAAGATTCTTCATAGATGGAAGAAGGTGGCACCAAATATTGATGAGGATCTTTTCATAAGAGTCCTCATTCAGCCAGGGAATGGTAGTGTTCCAGGTCAAAGAACTATTACCACTTCTTACAATGCTCTTTTGTTTGGTGGCTGA 2853 0.4073 MHSTKNLHCLFMDQNHKHKLHNNWLLTYSILLLLSFSFCSCSDTLFADKVITDVLSINPDGNLVLHHNYSTIPIWFTNVSATLSNSTNVIAQLSDIANLILIQNNTKTVIWQSFDHPSDTLLPYQRLGFDRRINPSWFLQSWKTDDDPGIGTFTLKFSTNRIPQMLMYKQNLPWWRGGHWNGELFVGTPNMKRDGITCNFSFVEDDNYVALSFNMFDKSVIARAVVQQSGFFQSFTWNNQKSQWNRYWSVPTNQCDNYGSCGSNSNCDPLNFEDFKCTCLPGFEPKFPHDWYENRDGSGGCVRKKGASICGNGEGFVKIEGLKLPDTSVAIAKRGLSLEECEKECLRNCSCTAYSVADVRNGGSGCLAWHGNLMDTLKLSDQGQDLFVRVDAVELANYYKKSKGVLDKKRMVEFLVASVLTIVLLLSCVYYLWKRKRKDKMRWHLNQDSPIEENNVQSNTHQNLPFFSLKIIMAATRNFCYENKLGQGGFGSVYKGHLASGQEIAVKRLSKNSGQGTEEFKNEVTLLVKLQHRNLVRLLGYCFEKEERMLIYEYLPNKSLDFFIFNENQRSSLDWGKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAALNPKISDFGMARIFGEDQIQASTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVLLLEIIAGKRNTDCETGRASPNLIGHVWMLWTEGRALDIVDSTLGHSYPPALVLRLCFEGEGTEMQENKQEKCIPTCPLSPAPNAYNFPDSVSEKSTGFRSADSVKGRLLRYGGDNITQGLIPIRCFWHMVQPNPPIPSYHMHVNHNHLMTMPVPHVLKNILIKILRLLQSAITITTLVVYMNGRREVKPVQLVDRGGGGGSFGVILWWKIKFVPVPQTVTVFTVTKTLEQGGNKILHRWKKVAPNIDEDLFIRVLIQPGNGSVPGQRTITTSYNALLFGG 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1176g00001 950 Pfam Protein tyrosine and serine/threonine kinase 482 678 IPR001245 GO:0004672|GO:0006468
Sebi1176g00001 950 Gene3D Phosphorylase Kinase; domain 1 453 554 - -
Sebi1176g00001 950 SUPERFAMILY Protein kinase-like (PK-like) 454 725 IPR011009 -
Sebi1176g00001 950 ProSiteProfiles Protein kinase domain profile. 479 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1176g00001 950 Gene3D Hepatocyte Growth Factor 308 388 - -
Sebi1176g00001 950 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Sebi1176g00001 950 ProSiteProfiles EGF-like domain profile. 251 289 IPR000742 -
Sebi1176g00001 950 Pfam PAN-like domain 310 376 IPR003609 -
Sebi1176g00001 950 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 444 554 - -
Sebi1176g00001 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Sebi1176g00001 950 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 148 IPR036426 -
Sebi1176g00001 950 SMART ntp_6 311 390 IPR003609 -
Sebi1176g00001 950 ProSiteProfiles PAN/Apple domain profile. 310 391 IPR003609 -
Sebi1176g00001 950 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 555 732 - -
Sebi1176g00001 950 Pfam D-mannose binding lectin 53 143 IPR001480 -
Sebi1176g00001 950 Gene3D - 888 949 - -
Sebi1176g00001 950 Gene3D - 865 887 IPR016169 -
Sebi1176g00001 950 ProSiteProfiles Bulb-type lectin domain profile. 1 114 IPR001480 -
Sebi1176g00001 950 CDD PAN_AP_plant 311 390 - -
Sebi1176g00001 950 Pfam S-locus glycoprotein domain 175 287 IPR000858 GO:0048544
Sebi1176g00001 950 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 54 712 - -
Sebi1176g00001 950 Gene3D Transferase(Phosphotransferase) domain 1 555 737 - -
Sebi1176g00001 950 Gene3D - 49 128 IPR036426 -
Sebi1176g00001 950 SMART serkin_6 479 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1176g00001 Sebi-Chr1176 37957 45074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1176g00001 402 741 Receptor kinase-like Gene Family AT4G23190 52.326 1.08e-107 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1176g00001 PK_Tyr_Ser-Thr 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1176g00001 - - tpra:123914661 1103.2