Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1174g00008 ATGGGACGTGTGATCCGTGCACAGCGTAAGGGTGCGGGTTCTGTATTCAAGTCCCACACTCACCACCGCAAGGGACCAGCTCGCTTCCGCAGTCTCGACTTCGGCGAACGGAACGGTCGTGGTGCACCACTTGCCAAGGTCACTTTCCGTCATCCTTTCCGTTACAAGAAGCAGAACGAGCTCTTCATCGCTGCTGAAGGTCTCTACAGTGGCCAATTCATTTACTGTGGCAAGAAAGCCACTCTCGTCGTTGGTAACGTCTTGCCTCTCCGTTCTATCCCCGAAGGAGCTGTTATCTGCAACGTCGAACACCACGTCGGTGACCGCGGTGTCTTCGCTAGAGCCTCTGGTGATTACGCCATTGTTATCAGTCACAATCCTGATAACGACACTTCTAGGATCAAGCTTCCATCTGGTGCAAAGAAGATTGTACCAAGTGAGTGTAGGGCAATGATTGGTCAAGTTGCTGGTGGTGGGAGAACTGAGAAGCCACTTCTTAAAGCTGGTAATGCTTATCACAAGTTTAGAGTGAAGAGAAATTGCTGGCCGAAGGTGCGTGGTGTTGCTATGAACCCTGTTGAGCATCCTCACGGAGGAGGTAATCACCAGCACATTGGACACGCAAGTACTGTTAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCCAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTGCTACTGCTGCTAAAGCTGATAAGGGTGCTTGA 744 0.5188 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGRGAPLAKVTFRHPFRYKKQNELFIAAEGLYSGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKGA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1174g00008 247 Gene3D - 76 155 IPR014722 -
Sebi1174g00008 247 MobiDBLite consensus disorder prediction 196 216 - -
Sebi1174g00008 247 FunFam 60S ribosomal protein L2 156 233 - -
Sebi1174g00008 247 Pfam Ribosomal Proteins L2, C-terminal domain 84 211 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi1174g00008 247 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 241 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi1174g00008 247 ProSitePatterns Ribosomal protein L2 signature. 183 194 IPR022671 GO:0003735|GO:0005840|GO:0006412
Sebi1174g00008 247 SUPERFAMILY Translation proteins SH3-like domain 85 232 IPR008991 -
Sebi1174g00008 247 Gene3D Ribosomal protein L2, domain 3 156 233 IPR014726 -
Sebi1174g00008 247 FunFam 60S ribosomal protein L2 1 72 - -
Sebi1174g00008 247 SMART Ribosomal_L2_2 11 76 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi1174g00008 247 SUPERFAMILY Nucleic acid-binding proteins 1 83 IPR012340 -
Sebi1174g00008 247 PANTHER RIBOSOMAL PROTEIN L2 2 240 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi1174g00008 247 MobiDBLite consensus disorder prediction 1 25 - -
Sebi1174g00008 247 Gene3D - 1 72 IPR012340 -
Sebi1174g00008 247 FunFam 60S ribosomal protein L8 76 155 - -
Sebi1174g00008 247 SMART Ribosomal_L2_C_2 82 217 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1174g00008 Sebi-Chr1174 49201 50910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1174g00008 1 244 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 87.597 4.13e-168 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1174g00008 K02938 - gmx:100802137 471.085