Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1173g00001 ATGACAAGCGTGGTGGACGCAGAGCGAGACAAGTACAGCATGATCAATTTTGAAGAGACCGAGTTGCGACTCGGTCTTCCTGGCGGCTCTGCAAATGATCACGGCGGCGAGTCATCCCTCAAAACCACTGCTGGAAAAAGAGGTTTCTCAGAGACTACTAATGTCGATTTGAAGCTTAATCTTTCTTCCACGAACGACTTAGCCTCTGCTTCTGTCTCTGTTTCTCCCTCAACTGTGGCCACAGAGAAGAAGACCACTGCTACTACTGCACCTCCTCCTCGTGCTAATGACCCTGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAGAACATTGTGAGTGGTCAAAGGAGCAACAACGAAGATGCAGAGAAGAGCAAAACTACCACCACTACCACCAACAACAGTGGCGCAGCGTTCGTGAAGGTGAGCATGGATGGTGCACCATATCTACGGAAGGTGGACCTCAAGCTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACTATTGGGAACTGTGGGTCCCATGGTATGAAGGACTTTATGAATGAGAGCAAATTGGTAGACCTTTTGAATGGCTCTGATTATGTACCCACATACGAAGACAAAGACGGAGACTGGATGCTCGTGGGGGATGTGCCCTGGGAAATGTTCGTTGAATCGTGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATCGGGCTTGGTTACGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGAAGTCATTTTCTTGCTCCAACAACAATCTGCTCGATCGTTGTGACTCATCCGTGTTCCGAGAGGATCGAAGCAAATTGGCTCGAGCAAGGTCGAGTCTAATATAG 903 0.4939 MTSVVDAERDKYSMINFEETELRLGLPGGSANDHGGESSLKTTAGKRGFSETTNVDLKLNLSSTNDLASASVSVSPSTVATEKKTTATTAPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVSGQRSNNEDAEKSKTTTTTTNNSGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGNCGSHGMKDFMNESKLVDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLGYAKGSGKVQEQKLKSFSCSNNNLLDRCDSSVFREDRSKLARARSSLI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1173g00001 300 Pfam AUX/IAA family 19 253 IPR033389 -
Sebi1173g00001 300 Gene3D - 140 259 - -
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 66 106 - -
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 35 49 - -
Sebi1173g00001 300 FunFam Auxin-responsive protein 141 256 - -
Sebi1173g00001 300 ProSiteProfiles PB1 domain profile. 146 246 IPR000270 GO:0005515
Sebi1173g00001 300 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 251 IPR003311 GO:0005634|GO:0006355
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 66 92 - -
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 118 140 - -
Sebi1173g00001 300 SUPERFAMILY CAD & PB1 domains 139 245 - -
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 119 140 - -
Sebi1173g00001 300 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1173g00001 Sebi-Chr1173 16156 19066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1173g00001 150 249 B3 DNA Binding Superfamily AT3G61830 34.000 4.38e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi1173g00001 AUX_IAA 1.3e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1173g00001 K14484 - gmx:100781847 335.88