Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1170g00001 ATGTCCGAAATGCCCCTCTTCATGCTGAAACTCCTGCTTCATTTTCTGCTCTTGCTCAGCGTCACATTGCCCTCCCAAGTAATTTCGCAAACAACAACCACTGAACAAACAATCCTACTCACCCTAAAACGACAGTTGGGGGATCCACCGTCGCTCCAATCATGGAAACCGTCATCGTCACCGTCCTCGCCGTGCGACTGGCCGGAGATCCGTTGCACCGGCGGCGCCGTCACGGAGCTCCTCCTCCCTAGCAAAGACATCACCACACAGAAGCTCCCAGCCACAATCTGTGACCTCAAAAACCTCACCAAGCTTGACCTCTCCAACAACTCCATCGCCGGCGAGTTTCCGGCATTGCTGTACAACTGCTCCAATCTCCGGTTCCTCGACCTGTCGCAGAACTACTTCTCCGGCGCCATTCCCGCCGACGTCGACCGCCTCAAAACTCTGACGCACCTCAACCTCGGCGGCAACAGTTTCTCCGGCGATGTGCCGGCGGCGATCGGGAGGCTCCGGGAGTTGCAAACGCTTCACCTTTATCAGAACAACTTCAACGGAACCTTCCCGAAGGAAATAGGGAACTTGTCCAATCTTGAAACCCTTGGTATGGCTTATAATGACAAGTTTTTGCCCATGGTGATCCCGTTCGAGTTCGGGAAGTTGAAGAGTTTGAGGTTCATGTGGATGTCACGGTGTAACTTGATCGGAGAGATTACAGAAAGTCTCGGGAATCTCAAGAGTCTCGAGCAGTTGGATTTATCAATGAACAATTTGACAGGTAGCATTCCTAGTAGCTTATTCTTGCTCAGGAACTTGACGTTTTTGTACTTGTACCATAATCGATTATCAGGTGTGGTACCTAGTTCGGTGCATGCACTGAATTTGACTGAAATAGATTTGGCTATGAACAATTTGACGGGTTCCATACCCCAAGAATTTGGAAAGTTGCAGAATTTGACAGGGCTACACCTGTATTCGAATCAGTTGTCTGGTGAGATTCCAAGCAGCTTAGGCCTAATTCCAAGTCTCAGAAACTTCAGGGTTTTCAGCAATAAGTTGAATGGAACATTGCCTTCAGAATTAGGCCTTTATTCAAAGCTTGTAGCATTTGAAGTTGCTGATAATCAATTCGTTGGTGGGTTGCCAGAACATTTGTGTGCAGGTGGTGCTTTGCTGGGTGTCATTGCTTTTTCTAACAATCTTAGTGGAGACTTGCCTCCATGGCTTGGAAATTGTACTTCTCTTACCACCATTCAGCTTTACAATAACAAATTTTCAGGGGAGGTTCCTTTGGGTTTGTGGAGTTTGAGGAAACTATCAACCTTGATGATAAGCAACAACTCATTTTCTGGTCATCTTCCAAGTAAATTGTCTTGGAATATGTCAAGACTTGAGATTGGACACAATAATTTTTCAGGTCAGATATCTCTTGGAGTTTCTTCAGCCTTGAATCTAGTAGTTTTTGATGCAAGAAACAACATGCTTTCGGGTGAAATTCCAAGGGAATTGACAGGTCTTTCTCGGCTTACTACTCTCATACTTGATGGTAATCAACTTTCTGGTCCACTTCCATCGAAGATAATCTCATGGCAATCACTGAATACTATATCACTCTCAAAAAACAAACTTTCCGGCCAAATCCCCATAGCCATGGCTGATCTTCCTAACCTTGTTTACTTGGATTTGTCTGAAAATGACATATCTGGTGAAATCCCAACTCAGCTTGCAAAATTGAGGCTTGTTTTTCTCAATTTGTCCTCCAACAAGCTTTCAGGGAACATCCCGGAAGAGTTTAATAACCTTGCATATCAAGATAGCTTCTTGAACAATCCTGATCTATGTGCTTACAATAAAAAGCTCAACCTTTCGAGCTGTTTGCCCGAAACCCCACCACACTCCAGCCATTCATCTTCCAAATTCCTTGCCCTGATTCTTGTTGTCACCATCATTGTGTTGCTGGGCACTGCCTCTTTGGCCATCTATTCATTGAAAAAGCACTGTGGCAAAAAGCACTGCAGGGGAAAGCGTTCAACATGGAGACTTACCTCATTCCAGAGGTTTGATCTCACAGAGATAAATCTCTTCTCAAGCTTGACAGACAATAACCTTATTGGAACTGGAGGATTTGGGAGTGTTTACCGGATTGCTTCAAATCGTCCGGGTGAGTATGTTGCAGTGAAAAAGATTTGGAATCGCAGAGATATGGATGACAAACTGGAGAAAGAATTTATGGCTGAGGTTGAAATCCTGGGCAACATTCGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAGAACTCCAAACTCCTTGTTTATGAATACATGGAAAACCAGAGCCTGGAGAAATGGCTTCATCGAAAGAAGAAAGCATCAGCTACTGATTTGAGTTCACCCAACAAGAATCACCTGGTGTTGAGTTGGCCAACGAGGTTGAAGATTGCCATTGGGGCTGCACAAGGCCTATATTACATGCACCATGAATGCTCACCACCAATCATCCACCGAGATGTCAAAGCTAGCAATATACTTCTAGACTCTGAGTTCAGGGCTTGTATAGCAGATTTTGGGCTCGCTAAGATGTTGGCAAAACCTGGGGAGCTACACACAATGTCTGCTATAGCAGGGTCTTTCGGTTACATTCCACCAGAATATGCCTATTCAACCAAGATTAACGAGAAAGCTGATGTATATAGCTTTGGGGTTGTACTCCTAGAGCTTGTGACTGGGAGAGAGCCTAATAGTAGTGGTGGGGAGCATGCAAGCAGCCTAGTTGATTGGGCATGGCAGCATTATAGTGATGGGAAGTGCCTCACTGATGCATTCGATGAGGATATCAAAGAAACACGTCATGCAGAAGCAATGACTAATGTCTTCAAATTAGGCCTCATGTGCACAAGCTCACTACCCTCGACCAGGCCTTCCGCGAAGGACATTTTGCAAGTCCTACGCCAGTGTTGTTCTCCAGGTTCTGCACGTAAAAGAGTGGCAACTGAGTTTGATATCACTCCTCTTCTTGGAGATACGAGGTACATTTCTAGTTACAAGGATGGCAGGTCTGTAAGCGAACATGGAGAAAGCTGCTTGTTTAGTGTGTAA 3105 0.4509 MSEMPLFMLKLLLHFLLLLSVTLPSQVISQTTTTEQTILLTLKRQLGDPPSLQSWKPSSSPSSPCDWPEIRCTGGAVTELLLPSKDITTQKLPATICDLKNLTKLDLSNNSIAGEFPALLYNCSNLRFLDLSQNYFSGAIPADVDRLKTLTHLNLGGNSFSGDVPAAIGRLRELQTLHLYQNNFNGTFPKEIGNLSNLETLGMAYNDKFLPMVIPFEFGKLKSLRFMWMSRCNLIGEITESLGNLKSLEQLDLSMNNLTGSIPSSLFLLRNLTFLYLYHNRLSGVVPSSVHALNLTEIDLAMNNLTGSIPQEFGKLQNLTGLHLYSNQLSGEIPSSLGLIPSLRNFRVFSNKLNGTLPSELGLYSKLVAFEVADNQFVGGLPEHLCAGGALLGVIAFSNNLSGDLPPWLGNCTSLTTIQLYNNKFSGEVPLGLWSLRKLSTLMISNNSFSGHLPSKLSWNMSRLEIGHNNFSGQISLGVSSALNLVVFDARNNMLSGEIPRELTGLSRLTTLILDGNQLSGPLPSKIISWQSLNTISLSKNKLSGQIPIAMADLPNLVYLDLSENDISGEIPTQLAKLRLVFLNLSSNKLSGNIPEEFNNLAYQDSFLNNPDLCAYNKKLNLSSCLPETPPHSSHSSSKFLALILVVTIIVLLGTASLAIYSLKKHCGKKHCRGKRSTWRLTSFQRFDLTEINLFSSLTDNNLIGTGGFGSVYRIASNRPGEYVAVKKIWNRRDMDDKLEKEFMAEVEILGNIRHSNIVKLLCCYSSENSKLLVYEYMENQSLEKWLHRKKKASATDLSSPNKNHLVLSWPTRLKIAIGAAQGLYYMHHECSPPIIHRDVKASNILLDSEFRACIADFGLAKMLAKPGELHTMSAIAGSFGYIPPEYAYSTKINEKADVYSFGVVLLELVTGREPNSSGGEHASSLVDWAWQHYSDGKCLTDAFDEDIKETRHAEAMTNVFKLGLMCTSSLPSTRPSAKDILQVLRQCCSPGSARKRVATEFDITPLLGDTRYISSYKDGRSVSEHGESCLFSV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1170g00001 1034 FunFam Kinase family with leucine-rich repeat domain-containing protein 778 1001 - -
Sebi1170g00001 1034 Pfam Leucine rich repeat 532 590 IPR001611 GO:0005515
Sebi1170g00001 1034 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Sebi1170g00001 1034 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Sebi1170g00001 1034 Gene3D Ribonuclease Inhibitor 187 291 IPR032675 -
Sebi1170g00001 1034 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 286 - -
Sebi1170g00001 1034 ProSiteProfiles Protein kinase domain profile. 698 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1170g00001 1034 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 384 475 - -
Sebi1170g00001 1034 FunFam Receptor-like protein kinase HSL1 isoform A 32 186 - -
Sebi1170g00001 1034 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 500 622 - -
Sebi1170g00001 1034 SUPERFAMILY Protein kinase-like (PK-like) 693 985 IPR011009 -
Sebi1170g00001 1034 Gene3D Transferase(Phosphotransferase) domain 1 778 1002 - -
Sebi1170g00001 1034 SUPERFAMILY L domain-like 42 382 - -
Sebi1170g00001 1034 CDD STKc_IRAK 704 985 - -
Sebi1170g00001 1034 PRINTS Leucine-rich repeat signature 245 258 - -
Sebi1170g00001 1034 PRINTS Leucine-rich repeat signature 102 115 - -
Sebi1170g00001 1034 ProSiteProfiles Leucine-rich repeat profile. 247 269 IPR001611 GO:0005515
Sebi1170g00001 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Sebi1170g00001 1034 Gene3D Ribonuclease Inhibitor 387 459 IPR032675 -
Sebi1170g00001 1034 Gene3D Ribonuclease Inhibitor 292 386 IPR032675 -
Sebi1170g00001 1034 Pfam Protein kinase domain 700 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1170g00001 1034 SMART serkin_6 698 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1170g00001 1034 SMART LRR_typ_2 436 460 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 171 195 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 245 268 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 269 292 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 99 123 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 506 530 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 316 340 IPR003591 -
Sebi1170g00001 1034 SMART LRR_typ_2 554 578 IPR003591 -
Sebi1170g00001 1034 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Sebi1170g00001 1034 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 289 383 - -
Sebi1170g00001 1034 SUPERFAMILY RNI-like 294 601 - -
Sebi1170g00001 1034 Gene3D Ribonuclease Inhibitor 460 643 IPR032675 -
Sebi1170g00001 1034 FunFam Receptor-like protein kinase HSL1 678 777 - -
Sebi1170g00001 1034 Gene3D Phosphorylase Kinase; domain 1 681 777 - -
Sebi1170g00001 1034 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524
Sebi1170g00001 1034 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 213 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1170g00001 Sebi-Chr1170 43518 46733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1170g00001 21 1008 Receptor kinase-like Gene Family AT5G25930 54.490 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi1170g00001 Pkinase 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1170g00001 - - adu:107461025 1442.17