Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi116g00047 ATGGATGACAATTCTGCAGACAGAAACTCTATTGGGTATCTATCAGATGGTCTTATAGTTCGAGCACAAGACAGGAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACCGAACATTCCTAATAGGACTTGAGAAGCTGGGAAAAGGAGATTGGAGGGGTATCTCTAGAAACTATGTGACAACAAGAACCCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTATTAGACTTGCATCCATTAATAAGAAGAAGAGACGTTCAAGTCTCTTTGACTTGGTTGTTAAATCTTCCAAATGTGATGATCAAGTTGAGAAAGATGCCACCTTGTCACTACTAGGATGCCTAACCTCATTTCAACAACAAGAAGTTACCAAATCAAATGAGCAGAAAATCACTTCTGCTGATATTAATTATCATAACTCTCAAGCTCAATATTCTTCAGCTGCAGAACATCAATCTGTGCCAATCTGGCTTCATCCTTCTAAGAACAAATCTTCAAATGTGACACCAAATGCATCAGTAGTTCCTGATCTGGAGCTCACACTTGCAGTCCCCAAGGCTAAGAGTACCCTGCAACAAGAACAAGCTAAATCATCCCCTGGTTCCTTCCTTCTTGGGCCAATTAGTGTCACCTAA 639 0.41 MDDNSADRNSIGYLSDGLIVRAQDRKKGVPWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLASINKKKRRSSLFDLVVKSSKCDDQVEKDATLSLLGCLTSFQQQEVTKSNEQKITSADINYHNSQAQYSSAAEHQSVPIWLHPSKNKSSNVTPNASVVPDLELTLAVPKAKSTLQQEQAKSSPGSFLLGPISVT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi116g00047 212 CDD SANT 30 75 IPR001005 -
Sebi116g00047 212 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Sebi116g00047 212 FunFam transcription factor MYB1R1 29 80 - -
Sebi116g00047 212 Gene3D - 29 81 - -
Sebi116g00047 212 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Sebi116g00047 212 MobiDBLite consensus disorder prediction 190 212 - -
Sebi116g00047 212 Pfam Myb-like DNA-binding domain 30 75 IPR001005 -
Sebi116g00047 212 ProSiteProfiles SANT domain profile. 31 79 IPR017884 -
Sebi116g00047 212 SMART sant 27 77 IPR001005 -
Sebi116g00047 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Sebi116g00047 212 NCBIfam myb-like DNA-binding domain, SHAQKYF class 26 77 IPR006447 GO:0003677
Sebi116g00047 212 PANTHER TRANSCRIPTION FACTOR KUA1 12 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi116g00047 Sebi-Chr116 959620 960672 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi116g00047 Myb_DNA-binding 6.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi116g00047 - - gmx:778053 229.18