Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi116g00012 ATGGCAAACGATGAAGCTGCCTGTCACATTAGAAACTCACAGGTTCGCGGTGACGGAAAAAAAAACCCCTCTACTTTAACCGCAGTGGAAAAATTGCAGTTCATTGATTTTTTTAACCGAACCATGGTTTATCCCAACCTAACCATAGTTAAGTGGCAGTTTATAAACGAAGCAAACCATGCCGGAGTTTCTGTAAACATCCACATAGATACGACCAAAACCATCAACAAAATGATGCTCGGAGAGCACCATCGCGCTAATCCAACGATCCATGTGCCTCCATGGCCAGTCCATGATGATCCAACGGTGGAGATGTATTCCCCGTGCTATGCAAACGACGGAGGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTGCAAGAAGCGCTGGCGGCGCTGCAACATTACTTGCCATCGAACGAGACGGACGGTGGCGACTCCGACTCGGGTCGCGATTCGGATGCTCCGGTTGACGCTTATTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGCGGAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTATTCCGGCACGGCGTGCCCTGATTTTCGCAAGGGGAATTGCAAGAAAGGTGACGCATGCGAGTTCGCGCATGGCGTTTTTGAGTGCTGGCTCCATCCTGCTCGCTACAGGACTCAGCCTTGTAAGGATGGTACCAGTTGCCGGCGGCGAGTGTGCTTCTTTGCTCACACGCCGGAACAGCTACGCCTTGTGCCGCAGCAGAGCCCCCGGAGCGCTAACTCGGCTGATTCTTATGATGGTTCTCCTCTGAGACAGGTTTCCATGCCATTTATGTCTTCTCCGGCGTCTGTTTCTCCGCCGGTGAGTCCTCCGGCGGATTCTCCGCCCATGTCGCCGATGACGCAGTCGCTGAGCCGGTCCCTGGGTTCAAGCTCCATCAATGAGATGGTGGCTTCTCTGCGGAATTTGCAGTTAGGGAAAGTGAAATCGTTTCCCTCTAACAGAAACATTTCAATGGGGTCTCCTGGATTCGGGTCCCCAAGAGGATCCGTGCTCCGACCCGGGTTTTGTAGCCTTCCCACTACGCCAACTCAGGCACCGACTCGTTCTGGTGTTAGTTACTTTGATCTTTGGGAGCAGAGCTGTGAAGAGGAACCAGTGATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGTTGAGCAAAGAGAACTCTCTGGATAGGTCGGGTTCGGGTCCTTCGGGTGGAGCCCCGGATGTGGATGGGTTTCTGAGCTGGTGA 1350 0.5415 MANDEAACHIRNSQVRGDGKKNPSTLTAVEKLQFIDFFNRTMVYPNLTIVKWQFINEANHAGVSVNIHIDTTKTINKMMLGEHHRANPTIHVPPWPVHDDPTVEMYSPCYANDGGNAGAGDYSPYYLQEALAALQHYLPSNETDGGDSDSGRDSDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSANSADSYDGSPLRQVSMPFMSSPASVSPPVSPPADSPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSFPSNRNISMGSPGFGSPRGSVLRPGFCSLPTTPTQAPTRSGVSYFDLWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGPSGGAPDVDGFLSW 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi116g00012 449 PANTHER UNKEMPT FAMILY MEMBER 118 443 IPR045234 -
Sebi116g00012 449 MobiDBLite consensus disorder prediction 301 315 - -
Sebi116g00012 449 MobiDBLite consensus disorder prediction 268 300 - -
Sebi116g00012 449 Gene3D - 205 268 - -
Sebi116g00012 449 SMART c3hfinal6 205 231 IPR000571 GO:0046872
Sebi116g00012 449 SMART c3hfinal6 240 263 IPR000571 GO:0046872
Sebi116g00012 449 FunFam Zinc finger CCCH domain-containing protein 66 163 231 - -
Sebi116g00012 449 MobiDBLite consensus disorder prediction 268 324 - -
Sebi116g00012 449 MobiDBLite consensus disorder prediction 425 449 - -
Sebi116g00012 449 ProSiteProfiles Zinc finger C3H1-type profile. 206 232 IPR000571 GO:0046872
Sebi116g00012 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi116g00012 Sebi-Chr116 343430 344779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi116g00012 161 355 C2H2 Transcription Factor Family AT5G12850 52.427 1.65e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi116g00012 zf-CCCH 4.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi116g00012 - - aprc:113867365 680.248