Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1166g00003 ATGGAGGTAGCTGGAGGGGCTGATATAGCTGACAGTGTAGCCCAATTCGCAAGGAGGCGTCAGCGTGGGGTTTGTGTCCTCAGTGGTAGTGGCTCTGTTGCAAACGTCACTCTCAGACAACCAGCAGCACCTGGTGCTGTTGTAGCACTTCATGGAAGGTTTGAGATTCTATCCCTAACTGGGACATTTCTTCCAGGACCTTCCCCTCCAGGGTCCACAGGACTCACAGTGTATCTTGCTGGAGGACAGGGTCAGGTTGTTGGAGGGAGTGTGGTCGGGTCTTTAGTTGCAGCAGGACCTGTTATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTTCCACTTGATGATGAGGATGAAGGGCCTAGTTCTGCTGTGCAAGGATCGCCGGGAACGGTGGCGGGGATTGGAGGACATCAGTTGCAGCAGCAGCAGCCTGGAGGAGGGCTTCCAGATCCATCATCTCTTCCTTTGTATAATTTGCCACCGAATCTGTTGCCTAATGGAGGAGGACAGGTGGGACATGAGGCTCTTGCTTGGGCTCATGGAAGACAACCTTACTAA 573 0.5236 MEVAGGADIADSVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPSPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDDEDEGPSSAVQGSPGTVAGIGGHQLQQQQPGGGLPDPSSLPLYNLPPNLLPNGGGQVGHEALAWAHGRQPY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1166g00003 190 CDD DUF296 2 80 IPR005175 -
Sebi1166g00003 190 MobiDBLite consensus disorder prediction 117 166 - -
Sebi1166g00003 190 MobiDBLite consensus disorder prediction 128 153 - -
Sebi1166g00003 190 Gene3D - 1 124 - -
Sebi1166g00003 190 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Sebi1166g00003 190 PIRSF ESCAROLA 1 190 IPR014476 GO:0003680
Sebi1166g00003 190 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Sebi1166g00003 190 ProSiteProfiles PPC domain profile profile. 1 131 IPR005175 -
Sebi1166g00003 190 FunFam AT-hook motif nuclear-localized protein 1 123 - -
Sebi1166g00003 190 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 185 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1166g00003 Sebi-Chr1166 80259 80831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1166g00003 1 190 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 64.583 2.32e-69 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1166g00003 - - qsa:O6P43_021453 231.876