Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1161g00002 ATGGTCCCTGTTCTACTTTCTTTGGTGTTTGGGGATATGGGATATAAGTATCCTCATTTGGGCATCCTATCTCTTTCTTCAAGGGTGGTGCAAGTTGTTTGTGGTAGTTTGAGGGTTGAAAATTTGGGAGCTGTTGTTGAAAGTTACTTCATTTGGGGTTCTTCCCAGCACTGCAGTTCTCACAATGGTGCTTCTCAGATGTTCCTTGGTGACACTTGTGCAGTGGTGTTTCTTGGCTGCTTACTTTGCTTGTCTTTGGGTCTTAACAATCAAACTCCATCCTGTGACCAAAGTGATTTTTCAGCCCTGAAGGAGTTTGCAGGCAACCTTACAAATGGCTCTATCATCACAGCATGGTCCAATGATATTGTCTGCTGCAACTGGATTGGAGTTATCTGTGATAATGTGACTGGGGCTAATGGAGCAGCTGCTAGTAGAGTTACCAAGTTGATCCTCCCTGGAATGAGTCTCAATGGGACAATTTCACCCTCTTTAGCACAGCTGGATCAGCTCAAAGTGCTGAATCTTTCATTTAATCATCTTGGAGGTGGATTGCCTGTAGAGTTCTCCAAATTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCAGGACCTGTTACTGGTCACTTTCTGGTTTGCAGTCCATTGAATTCTTCCAAGGATCTTCATACCCTTGATTTATCTGCAAATCATTTTGGTGGTGGTCTTGAAGGCTTGGATAACTGCACCACATCTCTCCAACAGTTGCATTTGGATTCCAATTCATTTTCTGGAATTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGCAATTCTCAGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAACCAACTAAGTAAGCTCTCTAGCCTAAAATCTCTGGTGGTTTCTGGCAACCGTTTTTCAGGGGAACTCCCAAATGTGTTTGGGAACCTTTCACACCTAGAACAGTTAATAGCACATGCCAATTTATTTTCTGGACCATTGCCTTCCACTTTGGCTTTATGCTCTAAGCTTATGGTGCTTGATTTTCGAAATAATTCCTTGTCAGGTCCTATTGATCTTGATTTCAGAGGGTTGTCCAATCTTTGCTCACTTGATCTTGCTAGTAATCATTTTATTGGACCCCTTCCTAGTTCTTTGTCCTATTGCCAGGAATTGAAAGTTTTAAGCCTTGCTAGGAATAGTTTAAATGGCACTATCCCTGAGAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCTTAGAGAACTTATCTGGGGCACTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACTCTTGTCCTCACTAAGAATTTCCATGGTGAGGAAATTCCAGGAAGTGTAACAGCAGGATTTGAGAGTCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATGTTCCTTCTTGGCTATCAGAGTGCAGGAAATTGGCAGTGCTTGATTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCACATGGACAGTTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAGGGGCCTCATGTGCTCAAATTGTAATAGAGCGAATCTCGCAGCTATTGCAGCCAATCCTCTCTTTGTTAAGAGGAACACAAGTGCTAGTGGGCTGCAATATAATCAGGCCTCAAGTTTCCCTCCATCCATTTACTTGAGCAATAACATGTTAAGTGGAAATATATGGCCTGAAATTGGTCGATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAACACTATTTCAGAGATGGAGAACTTGGAAACATTAGATTTATCTTATAATGATCTCTCTGGTGAAATCCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGGACATTGATTCTCCTTGCAAAATTATCAACAATATGAGGCCCAATATTTCTTCAGATTCATCCAGAAAATTTAGTCGAAGCAATGTCCTTGGCATAACAATTGGTATAGGGATAGGACTTGCACTGCTTCTTGCAATTATTCTTCTAAGAATGTCAAAGAGGGATGAGGATAAGCCTATTGATGACTATGATGAGGAACTCAATAGTAGGCCACACAGGTTATCTGAAGCACTTGTTTCCTCAAAATTGGTGCTTTTCCAGAATTCAGATTGCAAGGATCTCACAGTTTCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAACATTGTTGGTTGTGGTGGGTTTGGTCTTGTTTACAAGGCATATCTTCCAAATGGCACTAAAGCAGCTGTCAAGAGACTCTCTGGGGACTGTGGTCAAATGGAACGCGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTAGGCATGGGAATGACAGATTGCTAATTTACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGGAAATTCAGTTCTAAATTGGGATGTAAGACTCAAGATTGCACAAGGCGCAGCTCGCGGATTAGCTTACTTACACAAGGGGTGTGAACCATACATAGTTCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCTTATGATACTCATGTCACAACAGACTTAGTAGGAACATTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGCGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTACTTACTGGTAGAAGGCCTGTAGAAGTCATCAAGGGGAAAAATTGCAGGAATCTGGTGTCATGGGTTTTTCAGATGAAATATGAAAACAAGGAGCAGGAAATTTTTGATCCAGTCATTTGGCAGAAGGATCGTGAGAAACAACTATTGGAAGTTCTTGCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAGAGACCGTCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGCTGTCAACAGTGA 3120 0.4115 MVPVLLSLVFGDMGYKYPHLGILSLSSRVVQVVCGSLRVENLGAVVESYFIWGSSQHCSSHNGASQMFLGDTCAVVFLGCLLCLSLGLNNQTPSCDQSDFSALKEFAGNLTNGSIITAWSNDIVCCNWIGVICDNVTGANGAAASRVTKLILPGMSLNGTISPSLAQLDQLKVLNLSFNHLGGGLPVEFSKLKQLKFLDVSHNMLSGPVTGHFLVCSPLNSSKDLHTLDLSANHFGGGLEGLDNCTTSLQQLHLDSNSFSGILPDSLYSMSALEQFSVSANNLSGQLSNQLSKLSSLKSLVVSGNRFSGELPNVFGNLSHLEQLIAHANLFSGPLPSTLALCSKLMVLDFRNNSLSGPIDLDFRGLSNLCSLDLASNHFIGPLPSSLSYCQELKVLSLARNSLNGTIPENYANLTSLLFVSLSNNSLENLSGALSVLQQCKNLTTLVLTKNFHGEEIPGSVTAGFESLMVLALGNCGLKGHVPSWLSECRKLAVLDLSWNHLNGSIPSWIGHMDSLFYLDFSNNSLTGEIPKSLTELRGLMCSNCNRANLAAIAANPLFVKRNTSASGLQYNQASSFPPSIYLSNNMLSGNIWPEIGRLKALHVLDLSRNNITGTIPNTISEMENLETLDLSYNDLSGEIPPSFNNLTFLSKDIDSPCKIINNMRPNISSDSSRKFSRSNVLGITIGIGIGLALLLAIILLRMSKRDEDKPIDDYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVSDLLKSTNNFNQANIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDGNSVLNWDVRLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKYENKEQEIFDPVIWQKDREKQLLEVLAIACKCLDQDPRQRPSIEVVVSWLDSVRFDGCQQ 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1161g00002 1039 FunFam Phytosulfokine receptor 1 721 833 - -
Sebi1161g00002 1039 CDD STKc_IRAK 764 1030 - -
Sebi1161g00002 1039 SMART serkin_6 758 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1161g00002 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 291 1030 - -
Sebi1161g00002 1039 Pfam Leucine rich repeat N-terminal domain 97 134 IPR013210 -
Sebi1161g00002 1039 Gene3D Phosphorylase Kinase; domain 1 721 833 - -
Sebi1161g00002 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Sebi1161g00002 1039 Gene3D Ribonuclease Inhibitor 216 429 IPR032675 -
Sebi1161g00002 1039 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515
Sebi1161g00002 1039 Pfam Leucine rich repeat 582 636 IPR001611 GO:0005515
Sebi1161g00002 1039 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Sebi1161g00002 1039 SUPERFAMILY Protein kinase-like (PK-like) 740 1029 IPR011009 -
Sebi1161g00002 1039 SMART LRR_typ_2 414 437 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 294 317 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 168 191 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 623 646 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 246 269 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 513 537 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 366 390 IPR003591 -
Sebi1161g00002 1039 SMART LRR_typ_2 599 622 IPR003591 -
Sebi1161g00002 1039 SUPERFAMILY L domain-like 288 663 - -
Sebi1161g00002 1039 Gene3D Ribonuclease Inhibitor 99 215 IPR032675 -
Sebi1161g00002 1039 PRINTS Leucine-rich repeat signature 602 615 - -
Sebi1161g00002 1039 PRINTS Leucine-rich repeat signature 623 636 - -
Sebi1161g00002 1039 ProSiteProfiles Protein kinase domain profile. 758 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1161g00002 1039 FunFam Leucine-rich repeat receptor-like kinase 98 214 - -
Sebi1161g00002 1039 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Sebi1161g00002 1039 Gene3D Transferase(Phosphotransferase) domain 1 834 1036 - -
Sebi1161g00002 1039 Gene3D Ribonuclease Inhibitor 430 579 IPR032675 -
Sebi1161g00002 1039 Gene3D Ribonuclease Inhibitor 580 685 IPR032675 -
Sebi1161g00002 1039 Pfam Protein kinase domain 759 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1161g00002 1039 ProSitePatterns Protein kinases ATP-binding region signature. 764 786 IPR017441 GO:0005524
Sebi1161g00002 1039 FunFam Leucine-rich repeat receptor-like protein kinase 834 1038 - -
Sebi1161g00002 1039 SUPERFAMILY RNI-like 122 384 - -
Sebi1161g00002 1039 FunFam Tyrosine-sulfated glycopeptide receptor 1 363 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1161g00002 Sebi-Chr1161 39656 43212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1161g00002 98 678 Receptor kinase-like Gene Family AT5G07280 32.663 5.15e-54 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi1161g00002 Pkinase 7.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1161g00002 - - gmx:100797812 1501.11