Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi115g00032 ATGGACTTGGCAGATATCCTGAGGGAGCATTTACATCTATGCTGCTTCTCCACAGCTTTATTTGTAGCTGCCGCCATTTGCCCTTACACCTTGCCCAAACCCATCGTCAAGCCTTTTCAGAACTCTCTCATTTTCATCGCCTTTCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAACTTGGTAGTGGAAAGGTGAACATTCATGTATTAATGGCAATGGCAGCCTTTGCATCATTATTTATGGGAAACTCTTTGGAAGGAGGGTTACTTCTTGCCATGTTTAATCTGGCGCATATAGCTGAAGAGTATTTCACCAGCCGTTCAATGGTTGATGTCAAAGAGTTGAAGGAGAACAATCCAGAATTTGCGCTTGTTTTGGATACGAAGGATGATAAACTTCCTAATACATTTGACTTGGCATACAAGAGGGTTCCTGTGCATGATGTAAATGTAGGATCATATATCCTGGTTGGTGCTGGCGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAATTCCAGGTGGTGCAAGGAACTTAGATGGGAGAATAATTGTTAAGGTAACAAAGACATGGAAGGAATCAACTCTCAACAGAATTGTGCAGTTGACTGAAGAAGCACAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTACAGCAGGGTTGTTGTGGTGTTATCAGTTGCTATTGCTGTTATTGGGCCACTTGTATTTAAGTGGCCATTCATTAGTACATCAGCTTGCAGAGGTTCAATTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCACCATGTGCCTTGGCAGTGGCCCCATTGGCATATGCTATAGCTATCAGCTCCTGTGCTAGAAAGGGGATATTACTCAAAGGTGGACATGTTTTGGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACGGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACATTAAAAAGAAGGAATCAAACATTTCTTCCTGTTGCGTTCCCTCCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACTCACCCAATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTGCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACTGCCACTGTTAACAGCATTGAGTCAGGAACTGGAGGCGCTAAACTATTGAAAGCATCACTTGGGTCTGTAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAATCAAAAAAGATCAAGGAAGCTGTCAATACATCTTCTTATGGAAGTGAATTTGTTCATGCTGCCCTTTCAGTTAATCAAAAGGTAACATTGATTCACCTAGAGGATAAGCCTCGTCCAGGGGTTTTTAATGTTATTCAAGAATTGCGAGATGAAGCAAAGTTTCGTGTGATGATGCTGACCGGTGATCATGAATCTAGTGCTAGGAGAGTTGCAAGTGCTGTGGGCATCGGTGAGTTTCACTGCAACCTGAAGCCTGAAGATAAGCTGAGACATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGACGCTCCAGCACTTGCAGCTGCAACTGTTGGGATTGTTCTTGCTCATCGTGCTAGTGCAACTGCCATAGCTGTTGCTGATGTGTTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACCTCACTGATTAAGCAAAATGTGGCTCTGGCATTGTCATGCATTATCATGGCTTCCCTTCCGTCTGTTTTGGGATTTCTGCCACTGTGGTTGACGGATGAATGTCTTTCTGCTGCAGAACACCTGTTGTTCTCGGCTTTCTCATGA 2004 0.4346 MDLADILREHLHLCCFSTALFVAAAICPYTLPKPIVKPFQNSLIFIAFPLVGVSASLDALIELGSGKVNIHVLMAMAAFASLFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDVNVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLNRIVQLTEEAQLNKPKLQRWLDEFGERYSRVVVVLSVAIAVIGPLVFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHIKKKESNISSCCVPSCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSIAVESFEYFPGRGLTATVNSIESGTGGAKLLKASLGSVDFITSFCQSEDESKKIKEAVNTSSYGSEFVHAALSVNQKVTLIHLEDKPRPGVFNVIQELRDEAKFRVMMLTGDHESSARRVASAVGIGEFHCNLKPEDKLRHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSCIIMASLPSVLGFLPLWLTDECLSAAEHLLFSAFS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi115g00032 667 SUPERFAMILY Calcium ATPase, transmembrane domain M 72 648 IPR023298 -
Sebi115g00032 667 ProSitePatterns E1-E2 ATPases phosphorylation site. 338 344 IPR018303 -
Sebi115g00032 667 SUPERFAMILY HAD-like 334 650 IPR036412 -
Sebi115g00032 667 SFLD p-type atpase 318 619 IPR044492 -
Sebi115g00032 667 Gene3D - 108 234 - -
Sebi115g00032 667 NCBIfam HAD-IC family P-type ATPase 96 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi115g00032 667 NCBIfam HAD-IC family P-type ATPase 446 653 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi115g00032 667 Gene3D - 329 617 IPR023214 -
Sebi115g00032 667 NCBIfam heavy metal translocating P-type ATPase 70 653 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi115g00032 667 Pfam haloacid dehalogenase-like hydrolase 334 579 - -
Sebi115g00032 667 SUPERFAMILY Calcium ATPase, transduction domain A 144 229 IPR008250 -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 566 585 - -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 590 602 - -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 336 350 - -
Sebi115g00032 667 PRINTS P-type cation-transporting ATPase superfamily signature 512 522 - -
Sebi115g00032 667 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 2 651 - -
Sebi115g00032 667 Pfam E1-E2 ATPase 144 316 - -
Sebi115g00032 667 SFLD C1.7: P-type atpase like 318 619 - -
Sebi115g00032 667 CDD P-type_ATPase_HM 14 650 - -
Sebi115g00032 667 Gene3D - 347 497 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi115g00032 Sebi-Chr115 1690153 1697174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi115g00032 3 651 Primary Pumps ATPases AT4G37270 77.504 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi115g00032 K01534 - gmx:100776309 1180.24