Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi115g00030 ATGGCTGTGTCACGGAGGGAAATGGATCGGATCAAGGGCCCTTGGAGCCCGGAAGAGGACGAGGCCCTTCAGAAGCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCGCTGATCAGCAGGTCCATCCCGGGCCGGTCCGGGAAGTCCTGCAGGCTCAGATGGTGCAACCAGCTTTCTCCTCAGGTAGAGCACCGGGCCTTCACACCCGAAGAGGACGAGACCATAATCAGGGCCCATGCCCGGTTCGGAAACAAGTGGGCCACAATAGCCCGTCTCCTCTCCGGTCGAACCGATAACGCCATAAAAAACCACTGGAATTCCACACTCAAGCGCAACCGCTCAAGAGGTCCGCCAGCTGCGGTGCGCCGGGGGAGCCCTTCGGGCTCCGATATGAGCGATTCCGGCGTTCCCGCCGTCATGTCTCCTTCGCACGTGTTCCGGCCCGTGCCGGTTCGACCGCCTGTGGAAACAACCTCGTCGTCACACGAAGAAGACGATGGGCCTCCCACTTTGCTATCGCTTTCTCTTCCCGGCGTGGACTCCTCGGAAGTGTCGAATCGGGCAACGGCGGCGGTGCCGATCAGTCCTGTGCCGATAACCACCGTAACTGCTCAGGCTCCGGTGGCGGCGCAAGAGGTTGGGTTGGGGCCGTTGAACTTCAGTGCGGAGTTGATGGCGGTGATGCATGAGATGATAAGAAATGAAGTGAGGAGTTACATGGAGCAGCAACAAAATGGGATGTGTTTTGAGGGTGTTGATGGGTTCAGGAACATGTCTGTGAAGCGAATTGGGATTAGCAGGGTCGATTCCTAA 813 0.5879 MAVSRREMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRNRSRGPPAAVRRGSPSGSDMSDSGVPAVMSPSHVFRPVPVRPPVETTSSSHEEDDGPPTLLSLSLPGVDSSEVSNRATAAVPISPVPITTVTAQAPVAAQEVGLGPLNFSAELMAVMHEMIRNEVRSYMEQQQNGMCFEGVDGFRNMSVKRIGISRVDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi115g00030 270 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Sebi115g00030 270 SMART sant 11 60 IPR001005 -
Sebi115g00030 270 SMART sant 63 111 IPR001005 -
Sebi115g00030 270 MobiDBLite consensus disorder prediction 104 179 - -
Sebi115g00030 270 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Sebi115g00030 270 CDD SANT 14 56 IPR001005 -
Sebi115g00030 270 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Sebi115g00030 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Sebi115g00030 270 Pfam Myb-like DNA-binding domain 15 73 - -
Sebi115g00030 270 Gene3D - 65 124 - -
Sebi115g00030 270 PANTHER MYB PROTEIN-RELATED 12 160 - -
Sebi115g00030 270 FunFam Transcription factor MYB44 66 112 - -
Sebi115g00030 270 CDD SANT 66 109 IPR001005 -
Sebi115g00030 270 FunFam MYB transcription factor 12 63 - -
Sebi115g00030 270 Gene3D - 11 63 - -
Sebi115g00030 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi115g00030 Sebi-Chr115 1676314 1677196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi115g00030 4 269 MYB Transcription Factor Family AT4G37260 47.866 1.30e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi115g00030 Myb_DNA-bind_6 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi115g00030 K09422 - gmx:100806145 349.747