Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi115g00022 ATGAATGAATTTTGTGAAGGTTCATGTGTTAGCCTTGATGACGATAATATAGATATTAATGTTACTGGTGATGAATTTGATGTAAACCATAGTGAAGATGAAAATGATTCGGGTGGTCCTAGTGTGGAGGAAGAGTTAGGTAGAATGGATCATAGAGGTAAAAGAATGGAAGATTTGACTCTTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGAGCATGGGGAGATATTTTATAGGGCATATGCAAAGCGTCATGGATTTGTTGTTAGAAAGGATGAGATTGATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGCAACAAAGAGGGTAGTAGGAACAAAAAACATTTGATGAGGGTGGATAGGAAAAAAGAACATAGGCCATTAATGCGTCTGGATTGTCAAGCTAAGATACGAATTCGCTTAGATTATAAGACAGATAAATGGAAAGTGGTTTCTTTTGTGGAGACCCACAATCATGAGCTTACCCCTTCTACTTTTGTGCACTTACTACCTAGTAATAGAGGGTTGAATAATGCTGATAAAGCCCAAGTAGGGAGGTTGCATGCATATGGTGTAAGAACGTGTCACATAATGGGGTACATGCTAGATCAAAAAGGGGGATATGGTTCCCTCGGGTTTTGTAGAAAGGATCTGTATAATTATATTGAACGACAGAAGCTAGAAAAGATTAAAGATGGGGATGCACATTCTGCCTTATGTTACATACAAGCAAAGGCAAACAATGATCCCACGCTTCGGGCTAGTTTCCTTGCTTCCGAGGACGGTGGAGCATTTCAGAGGCTGGGTTGTATTGCTAAAGAGAAGAAAGAATATTTCAATGATATAATAGATGATGTCTTGAAGCTAGTTCATAAATATGAGACTATTGGGGAACCACATGGCAGACAAACCTCATCTGAAAAGATTGTCAAAGATCCAGCAGTGGTGAAAACTAAAGGAGCACCGCCTAAAAGAAAGTATGGGAGGAAGAGGAGAAGGTGCTCAAATTGCAATAGAACCGGTCACATTATAAGCAAATGTCCTAAGCTTTATGGTAGGGATCAGCAAAAGATGGATGATGTGAATGAGGATGAAGGAAACATATCATTAGATGAAGTCAATGTTGATGGCATGGAGCCAAGTGACCAAACTCAAAGACTAAACAATAATGAAGTGAACGTGAAAATTAGTGGTAGACACAAAGAGAAGGAGAAGGATTGCACCCAAGATGTGGAAGTGAAAGTTAGTGGTACTCATGAAGGGAAGGAGAAGGAATGCACCCAAGTAGATGAAACTGAAGCTTAA 1320 0.3939 MNEFCEGSCVSLDDDNIDINVTGDEFDVNHSEDENDSGGPSVEEELGRMDHRGKRMEDLTLVDIRNMEFASEEHGEIFYRAYAKRHGFVVRKDEIDRDIKGNVIMRQFVCNKEGSRNKKHLMRVDRKKEHRPLMRLDCQAKIRIRLDYKTDKWKVVSFVETHNHELTPSTFVHLLPSNRGLNNADKAQVGRLHAYGVRTCHIMGYMLDQKGGYGSLGFCRKDLYNYIERQKLEKIKDGDAHSALCYIQAKANNDPTLRASFLASEDGGAFQRLGCIAKEKKEYFNDIIDDVLKLVHKYETIGEPHGRQTSSEKIVKDPAVVKTKGAPPKRKYGRKRRRCSNCNRTGHIISKCPKLYGRDQQKMDDVNEDEGNISLDEVNVDGMEPSDQTQRLNNNEVNVKISGRHKEKEKDCTQDVEVKVSGTHEGKEKECTQVDETEA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi115g00022 439 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Sebi115g00022 439 MobiDBLite consensus disorder prediction 25 50 - -
Sebi115g00022 439 ProSiteProfiles Zinc finger CCHC-type profile. 337 354 IPR001878 GO:0003676|GO:0008270
Sebi115g00022 439 MobiDBLite consensus disorder prediction 402 439 - -
Sebi115g00022 439 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Sebi115g00022 439 SUPERFAMILY Retrovirus zinc finger-like domains 326 360 IPR036875 GO:0003676|GO:0008270
Sebi115g00022 439 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi115g00022 Sebi-Chr115 1372610 1375486 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi115g00022 FAR1 1.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi115g00022 - - ccaj:109792835 275.404