Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1156g00006 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCATTTGCTTCTGCTCTGCTTGTCAGGCACAGGCATGAAAACAAAAAGTATGTTCTCAAGAAGATCCGCCTTGCCCGCCAGACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATTGTTATTGGCTATTGTGAAGGAGGAGACATGGCTGAAGCTATTAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAGGCTTTGTAAGTGGCTTGTTCAACTGCTGATGGCACTGGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACTAAAGATCGAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCAGTCGTAGGGACTCCAAGTTATATGTGCCCAGAGCTCCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAGTGTATTCTAGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAACCATCCACATCTTCAACCTTATATTCTTAAAGTCCATCTAAAACTAAATAACCCCAGAAGAAGTACTTTTCCATTTCAATGGCCTGGCTCAAACTATGCAAGGAGAGCTCAGTTTATAGAGCCAGAATCTGTTTCCACTCTTTCTGACAGAGATAAAAGATTATCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAATTAGGTTCTCTGTGTTCTACTCAAAGAGCACGAGGATTCTCTGCTTGTTCGAAAGAGAAACACTATGAACTATCTGTTGGCTGTGTTAGTGAAGAATGCAATCGTAACAAGTCAAAAGACACTAAGCTGTCAGCTGTTGATAGGACCATTAGGACACCAAGACTGAGAGCAGCCAAGGAACCTGCCACCCCCCGACGATACACATTACCATCAAAGATATCCCATACTGGTTCCAAGCGTGATTCACTTCCAGCATCTTCTACTCCAGCTGGTAAATTTACGCCACCAACTCGCAGAGCTTCCCTTCCACTTCCTACGAGATCCATGGCCACAACCACCCCTTATAGAGCCAATATTGGTCTTCTTCAAAGTGTGGACTCTCCTGATATTTCTGTTAATGCACCACGAATTGACAAGATTGCTGAATTCCCTTTGGCCCCTGGTGAGGATCCCCTCTTCCCTGTCCGTGGAACTTCATCAACATCAGCTCAGTGCTCTTCTGGTGGTTCCTTAAGGAGTACTGACTGCTTAATCACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAAGGTGTCCCTACCAGTGGCAGTGATGCTCATGCTTGTCCTGGTACTGTAGTTTCATACGGCAATGAATGCTCTGAACATGTGACAACTGCTGTTTCAAGCCATTCCTCTGCTGAGTCTCGTCAGCGCAGGTTTGACCCTTCGTCTTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCGCGGCTCCTACAACAACAGAAGTTTGAAGAGCTTGGGGTGTTGTTGAAGCCATTTGGGCCTGAGAAGTTTAATAGTGTGTTGTGGATTGGTTCCAAAAATCCAATAGAAAATAGGGAAAACAATGAGGAAGCAAAAGAGTTGGAACAAAGACACGCTCGCAATGAAGTTTTACGTAAGAGAGAGGACAAGGAAGCTTGA 1932 0.4363 MEQYEILEQIGKGSFASALLVRHRHENKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSSSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWPGSNYARRAQFIEPESVSTLSDRDKRLSFSNDRALNPSISGTELGSLCSTQRARGFSACSKEKHYELSVGCVSEECNRNKSKDTKLSAVDRTIRTPRLRAAKEPATPRRYTLPSKISHTGSKRDSLPASSTPAGKFTPPTRRASLPLPTRSMATTTPYRANIGLLQSVDSPDISVNAPRIDKIAEFPLAPGEDPLFPVRGTSSTSAQCSSGGSLRSTDCLITKDKCTIQVVDKGVPTSGSDAHACPGTVVSYGNECSEHVTTAVSSHSSAESRQRRFDPSSYQQRAEALEGLLEFSARLLQQQKFEELGVLLKPFGPEKFNSVLWIGSKNPIENRENNEEAKELEQRHARNEVLRKREDKEA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1156g00006 643 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1156g00006 643 SUPERFAMILY Protein kinase-like (PK-like) 1 315 IPR011009 -
Sebi1156g00006 643 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Sebi1156g00006 643 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Sebi1156g00006 643 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Sebi1156g00006 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 575 - -
Sebi1156g00006 643 MobiDBLite consensus disorder prediction 380 429 - -
Sebi1156g00006 643 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1156g00006 643 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1156g00006 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Sebi1156g00006 643 MobiDBLite consensus disorder prediction 614 643 - -
Sebi1156g00006 643 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Sebi1156g00006 643 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Sebi1156g00006 643 CDD STKc_Nek 3 258 - -
Sebi1156g00006 643 MobiDBLite consensus disorder prediction 393 418 - -
Sebi1156g00006 643 MobiDBLite consensus disorder prediction 610 643 - -
Sebi1156g00006 643 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1156g00006 Sebi-Chr1156 65844 72210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1156g00006 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 6.34e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sebi1156g00006 Pkinase 8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1156g00006 K08857 - gmx:100810347 1047.34