Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1155g00003 ATGGCAACACCACCACCCACCGATGCCTCTGCCAAGAAGGTCAGAAAGCCCTACACCATTACCAAGTCCAGAGAGAGCTGGACTGAGGAAGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACTGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTACCACTACCAGCTTCCATTCATTATGCTTCTTCGACAAATACCCTTGCTCCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATGCCGGGTCCAATAAACCCATGATCTGTCAGGATGAACTCAACATTCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAACAACAGTGTTAGTGGTGTTGGGAATTCTACTAGAAGGATACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAATGGTCATGTTCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAATCTCACTGTCAACTTGTCTAGCCCTGACTTTGAGTCTATTAAGAATGTATTGTCAGTATATGATGTGAATACTGCGGCAGTAGGAGTTACTACAGGAATTGATGTCAAGAAGCAGACGAATGATCTATCATGTCAAACGGCGTAA 861 0.417 MATPPPTDASAKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIHYASSTNTLAPGYATWDETSMLMNAGSNKPMICQDELNILHGNEADIGSKGITQINNSVSGVGNSTRRILTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFESIKNVLSVYDVNTAAVGVTTGIDVKKQTNDLSCQTA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1155g00003 286 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Sebi1155g00003 286 ProSiteProfiles SANT domain profile. 22 75 IPR017884 -
Sebi1155g00003 286 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Sebi1155g00003 286 CDD SANT 26 69 IPR001005 -
Sebi1155g00003 286 Gene3D - 27 74 - -
Sebi1155g00003 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Sebi1155g00003 286 PANTHER SWI/SNF COMPLEX-RELATED 8 245 - -
Sebi1155g00003 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Sebi1155g00003 286 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Sebi1155g00003 286 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Sebi1155g00003 286 SMART sant 23 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1155g00003 Sebi-Chr1155 47982 52310 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi1155g00003 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1155g00003 - - gmx:100797466 486.108