Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1154g00004 ATGGAACAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTTGCGAAGGTCTACCATGCTAGGAACCTTAAAACTGGCATGAGTGTGGCAATTAAGGTAGTTGACAAAGAAAAGATTTTGAAAGTTGGAATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTAGTCAGGCATCCACATGTGATTGAGCTATATGAGGTAATGGCTAGTAAAACCAAAATTTACTTTGTCATGGAGTATGCAAAAGGTGGTGAGCTCTTCAACAAGATAGCCAAAGGAAGGCTCAAGATGGATGTTGCTAGGAGATATTTTCAGCAACTAATTAGTGCAGTTGATTACTGCCATGGCAGGGGTGTGTGTCATCGAGATTTAAAACCTGAAAATCTACTATTGGATGATAATGAGAATTTGAAGGTCTCAGATTTTGGGTTGAGCACCCTTTCTGAATCTAAGTGCCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTATGATGGGTGCAAAGCTGATATATGGTCTTGTGGGGTAATCTTGTATGCTCTATTGGCTGGTTATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGAAAAATTGCTAGGGGGGAATTCAAATTTCCTAAATGGTTTCCACTTGAGGTTCGCCGGTTATTGTCCAAAATATTGGATCCAAACCCAAAGACCAGGATATCAATAGCCAAGATTATGCAAAATTCTTGGTTTAAAAAGGGGTTGGAGAAGCCAGTTATTGTTGAGACCAGAAACAAAGAAGAAGCTCCTCTGGATGCTGATGGAGTCCTTGAAGTGAGTGAAAATGTTGGTCCTATTGCAGATTCAAAGCAAGAACAGGCAAAGCTTTGTAATTTAAATGCTTTTGATATCATCTCCTTCTCAACTGGCTTTGATTTATCTGGTTTGTTTGAGGACACAGTTCATAAGAAAGAGATGAGGTTTACATCTAACAAGCCTGCCTCAACTATAATCTCAAAGTTGGAAGAAATTTGCAAGTGTTTTCACTTGAAAATAAGGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAATGAAGGGAGAAAAGGGACCCTGGGAATTGATGCTGAGATTTTTGAGATTACCCCACACTTCCATCTGGTGGAATTTAAAAAGTCCAATGGTGATACAGTGGAGTACCAGCAGCTTCTGAAGCAGGACATTAGACCAGCACTTAAGGACATTGTTTGGGCCTGGCAAGGAGACAACCACAGCAACTCCAACATGAAGAAGTAG 1344 0.4025 MEQKGSVLMQRYELGRLLGQGTFAKVYHARNLKTGMSVAIKVVDKEKILKVGMIDQIKREISVMRLVRHPHVIELYEVMASKTKIYFVMEYAKGGELFNKIAKGRLKMDVARRYFQQLISAVDYCHGRGVCHRDLKPENLLLDDNENLKVSDFGLSTLSESKCQDGLLHTTCGTPAYVAPEVINRKGYDGCKADIWSCGVILYALLAGYLPFHDSNLMEMYRKIARGEFKFPKWFPLEVRRLLSKILDPNPKTRISIAKIMQNSWFKKGLEKPVIVETRNKEEAPLDADGVLEVSENVGPIADSKQEQAKLCNLNAFDIISFSTGFDLSGLFEDTVHKKEMRFTSNKPASTIISKLEEICKCFHLKIRKKDGGLFKLEGSNEGRKGTLGIDAEIFEITPHFHLVEFKKSNGDTVEYQQLLKQDIRPALKDIVWAWQGDNHSNSNMKK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1154g00004 447 Pfam NAF domain 313 369 IPR004041 GO:0007165
Sebi1154g00004 447 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Sebi1154g00004 447 CDD STKc_SnRK3 11 265 - -
Sebi1154g00004 447 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1154g00004 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 429 - -
Sebi1154g00004 447 Gene3D Transferase(Phosphotransferase) domain 1 92 297 - -
Sebi1154g00004 447 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1154g00004 447 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Sebi1154g00004 447 CDD CIPK_C 315 429 - -
Sebi1154g00004 447 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Sebi1154g00004 447 Gene3D Kinase associated domain 1, KA1 310 434 - -
Sebi1154g00004 447 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sebi1154g00004 447 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Sebi1154g00004 447 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1154g00004 447 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Sebi1154g00004 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Sebi1154g00004 447 FunFam Non-specific serine/threonine protein kinase 2 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1154g00004 Sebi-Chr1154 71545 72888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1154g00004 1 438 CBL-interacting serine-threonine protein kinases AT5G58380 66.150 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi1154g00004 Pkinase 9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1154g00004 K07198 - gmx:100803787 752.666